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The Generation Of Random Binary Unordered Trees
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Book Synopsis Algorithms on Trees and Graphs by : Gabriel Valiente
Download or read book Algorithms on Trees and Graphs written by Gabriel Valiente and published by Springer Nature. This book was released on 2021-10-11 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: Graph algorithms is a well-established subject in mathematics and computer science. Beyond classical application fields, such as approximation, combinatorial optimization, graphics, and operations research, graph algorithms have recently attracted increased attention from computational molecular biology and computational chemistry. Centered around the fundamental issue of graph isomorphism, this text goes beyond classical graph problems of shortest paths, spanning trees, flows in networks, and matchings in bipartite graphs. Advanced algorithmic results and techniques of practical relevance are presented in a coherent and consolidated way. This book introduces graph algorithms on an intuitive basis followed by a detailed exposition in a literate programming style, with correctness proofs as well as worst-case analyses. Furthermore, full C++ implementations of all algorithms presented are given using the LEDA library of efficient data structures and algorithms.
Author :O. R. P. Bininda-Emonds Publisher :Springer Science & Business Media ISBN 13 :9781402023293 Total Pages :568 pages Book Rating :4.0/5 (232 download)
Book Synopsis Phylogenetic Supertrees by : O. R. P. Bininda-Emonds
Download or read book Phylogenetic Supertrees written by O. R. P. Bininda-Emonds and published by Springer Science & Business Media. This book was released on 2004-08-25 with total page 568 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.
Book Synopsis Case-Based Reasoning Research and Development by : Lorraine McGinty
Download or read book Case-Based Reasoning Research and Development written by Lorraine McGinty and published by Springer Science & Business Media. This book was released on 2009-07-10 with total page 537 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 8th International Conference on Case-Based Reasoning, ICCBR 2009, held in Seattle, WA, USA, in July 2009. The 17 revised full papers and 17 revised poster papers presented together with 2 invited talks were carefully reviewed and selected from 55 submissions. Covering a wide range of CBR topics of interest both to practitioners and researchers, the papers are devoted to theoretical/methodological as well as to applicative aspects of current CBR analysis.
Book Synopsis Tree Balance Indices by : Mareike Fischer
Download or read book Tree Balance Indices written by Mareike Fischer and published by Springer Nature. This book was released on 2023-12-02 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: Whether you are looking for an introduction to the field of tree balance, a reference work on the multitude of available balance indices or inspiration for your future research, this book offers all three. It delves into the significance of tree balance in phylogenetics and other research domains, where numerous indices have been introduced over the years. While the variations in definitions and underlying principles among these indices have long remained a challenge, this survey addresses the problem by presenting formal definitions of balance and imbalance indices and establishing desirable properties. The book is comprehensive both in the inclusion of a variety of indices and in the information provided on them: the authors meticulously analyze and categorize established indices, shedding light on their general, statistical and combinatorial properties. They reveal that, while some known balance indices fail to meet the most basic criteria, certain tree shape statistics from other contexts prove to be effective balance measures. The collected properties are neatly presented, numerous new results are established, open research questions are highlighted, and possible applications are discussed. Reviewing over twenty (im)balance indices, a wealth of mathematical insights is provided, accompanied by real-world examples showcasing the importance of tree balance in diverse research areas. Catering to researchers, students, mathematicians, and biologists, the book can be used as a textbook for university seminars, a reference on tree balance, and as a source of inspiration for future research. It is accompanied by the free R package 'treebalance', a powerful tool to further explore and apply the discussed concepts, and a website allowing quick access to the main information and the latest developments in the field.
Download or read book Bioconsensus written by DIMACS (Group) and published by American Mathematical Soc.. This book was released on 2003 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the rapidly developing field of bioconsensus, consensus methods from the social and behavioral sciences are used when choosing among alternative solutions to problems in the biological sciences. This text for mathematical and evolutionary biologists and computer scientists contains 16 contributions on various topics in bioconsensus. Included are papers originally presented at meetings held in 2000 and 2001 at the DIMACS Center as well as some from experts who did not attend the meetings. These papers provide historical background, discuss the axiomatic foundations of the field of bioconsensus, and apply consensus methods to real data. The volume is not indexed. Annotation (c)2003 Book News, Inc., Portland, OR (booknews.com).
Book Synopsis Analytic Combinatorics by : Philippe Flajolet
Download or read book Analytic Combinatorics written by Philippe Flajolet and published by Cambridge University Press. This book was released on 2009-01-15 with total page 825 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analytic combinatorics aims to enable precise quantitative predictions of the properties of large combinatorial structures. The theory has emerged over recent decades as essential both for the analysis of algorithms and for the study of scientific models in many disciplines, including probability theory, statistical physics, computational biology, and information theory. With a careful combination of symbolic enumeration methods and complex analysis, drawing heavily on generating functions, results of sweeping generality emerge that can be applied in particular to fundamental structures such as permutations, sequences, strings, walks, paths, trees, graphs and maps. This account is the definitive treatment of the topic. The authors give full coverage of the underlying mathematics and a thorough treatment of both classical and modern applications of the theory. The text is complemented with exercises, examples, appendices and notes to aid understanding. The book can be used for an advanced undergraduate or a graduate course, or for self-study.
Book Synopsis Classification, 2nd Edition by : A.D. Gordon
Download or read book Classification, 2nd Edition written by A.D. Gordon and published by CRC Press. This book was released on 1999-06-17 with total page 274 pages. Available in PDF, EPUB and Kindle. Book excerpt: As the amount of information recorded and stored electronically grows ever larger, it becomes increasingly useful, if not essential, to develop better and more efficient ways to summarize and extract information from these large, multivariate data sets. The field of classification does just that-investigates sets of "objects" to see if they can be summarized into a small number of classes comprising similar objects. Researchers have made great strides in the field over the last twenty years, and classification is no longer perceived as being concerned solely with exploratory analyses. The second edition of Classification incorporates many of the new and powerful methodologies developed since its first edition. Like its predecessor, this edition describes both clustering and graphical methods of representing data, and offers advice on how to decide which methods of analysis best apply to a particular data set. It goes even further, however, by providing critical overviews of recent developments not widely known, including efficient clustering algorithms, cluster validation, consensus classifications, and the classification of symbolic data. The author has taken an approach accessible to researchers in the wide variety of disciplines that can benefit from classification analysis and methods. He illustrates the methodologies by applying them to data sets-smaller sets given in the text, larger ones available through a Web site. Large multivariate data sets can be difficult to comprehend-the sheer volume and complexity can prove overwhelming. Classification methods provide efficient, accurate ways to make them less unwieldy and extract more information. Classification, Second Edition offers the ideal vehicle for gaining the background and learning the methodologies-and begin putting these techniques to use.
Download or read book Random Trees written by Michael Drmota and published by Springer Science & Business Media. This book was released on 2009-04-16 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: The aim of this book is to provide a thorough introduction to various aspects of trees in random settings and a systematic treatment of the mathematical analysis techniques involved. It should serve as a reference book as well as a basis for future research.
Book Synopsis Proceedings of the Fifth SIAM International Conference on Data Mining by : Hillol Kargupta
Download or read book Proceedings of the Fifth SIAM International Conference on Data Mining written by Hillol Kargupta and published by SIAM. This book was released on 2005-04-01 with total page 670 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Fifth SIAM International Conference on Data Mining continues the tradition of providing an open forum for the presentation and discussion of innovative algorithms as well as novel applications of data mining. Advances in information technology and data collection methods have led to the availability of large data sets in commercial enterprises and in a wide variety of scientific and engineering disciplines. The field of data mining draws upon extensive work in areas such as statistics, machine learning, pattern recognition, databases, and high performance computing to discover interesting and previously unknown information in data. This conference results in data mining, including applications, algorithms, software, and systems.
Book Synopsis Exploratory Data Analysis with MATLAB by : Wendy L. Martinez
Download or read book Exploratory Data Analysis with MATLAB written by Wendy L. Martinez and published by CRC Press. This book was released on 2010-12-16 with total page 525 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since the publication of the bestselling first edition, many advances have been made in exploratory data analysis (EDA). Covering innovative approaches for dimensionality reduction, clustering, and visualization, Exploratory Data Analysis with MATLAB®, Second Edition uses numerous examples and applications to show how the methods are used in practice. New to the Second Edition Discussions of nonnegative matrix factorization, linear discriminant analysis, curvilinear component analysis, independent component analysis, and smoothing splines An expanded set of methods for estimating the intrinsic dimensionality of a data set Several clustering methods, including probabilistic latent semantic analysis and spectral-based clustering Additional visualization methods, such as a rangefinder boxplot, scatterplots with marginal histograms, biplots, and a new method called Andrews’ images Instructions on a free MATLAB GUI toolbox for EDA Like its predecessor, this edition continues to focus on using EDA methods, rather than theoretical aspects. The MATLAB codes for the examples, EDA toolboxes, data sets, and color versions of all figures are available for download at http://pi-sigma.info
Book Synopsis Bioinformatics Research and Applications by : Anu Bourgeois
Download or read book Bioinformatics Research and Applications written by Anu Bourgeois and published by Springer. This book was released on 2016-05-27 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 12th International Symposium on Bioinformatics Research and Applications, ISBRA 2016, held in Minsk, Belarus, in June 2016. The 25 papers presented in this volume were carefully reviewed and selected from 77 submissions. They were organized in topical sections named: next generation sequencing data analysis; protein-protein interactions and networks; protein and RNA structure; phylogenetics; sequence analysis; and statistical methods.
Book Synopsis Cluster Analysis by : Brian S. Everitt
Download or read book Cluster Analysis written by Brian S. Everitt and published by Taylor & Francis. This book was released on 2001 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cluster analysis comprises a range of methods of classifying multivariate data into subgroups and these techniques are widely applicable. This new edition incorporates material covering developing areas such as Bayesian statistics & neural networks.
Download or read book Numerical Ecology written by P. Legendre and published by Elsevier. This book was released on 2012-07-21 with total page 1007 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book describes and discusses the numerical methods which are successfully being used for analysing ecological data, using a clear and comprehensive approach. These methods are derived from the fields of mathematical physics, parametric and nonparametric statistics, information theory, numerical taxonomy, archaeology, psychometry, sociometry, econometry and others. - An updated, 3rd English edition of the most widely cited book on quantitative analysis of multivariate ecological data - Relates ecological questions to methods of statistical analysis, with a clear description of complex numerical methods - All methods are illustrated by examples from the ecological literature so that ecologists clearly see how to use the methods and approaches in their own research - All calculations are available in R language functions
Book Synopsis Massive Data Sets by : National Research Council
Download or read book Massive Data Sets written by National Research Council and published by National Academies Press. This book was released on 1997-02-10 with total page 219 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Bioinformatics Research and Applications by : Zhipeng Cai
Download or read book Bioinformatics Research and Applications written by Zhipeng Cai and published by Springer. This book was released on 2017-05-29 with total page 499 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 13th International Symposium on Bioinformatics Research and Applications, ISBRA 2017, held in Honolulu, HI, USA, in May/June 2017. The 27 full papers presented together with 18 short papers and 24 invited abstracts were carefully reviewed and selected from 131 submissions. They cover topics such as: biomarker discovery; biomedical databases and data integration; biomedical text mining and ortologies; biomolecular imaging; comparative genomics; computational genetic epidemiology; computational proteomics; data mining and visualization; gene expression analysis; genome analysis; high-performance bio-computing; metagenomics; molecular evolution; molecular modelling and simulation; next-generation sequencing data analysis; pattern discovery and classification; population genetics; software tools and applications; structural biology; and systems biology.
Book Synopsis Data Science, Classification, and Related Methods by : Chikio Hayashi
Download or read book Data Science, Classification, and Related Methods written by Chikio Hayashi and published by Springer Science & Business Media. This book was released on 2013-11-11 with total page 786 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains selected papers covering a wide range of topics, including theoretical and methodological advances relating to data gathering, classification and clustering, exploratory and multivariate data analysis, and knowledge seeking and discovery. The result is a broad view of the state of the art, making this an essential work not only for data analysts, mathematicians, and statisticians, but also for researchers involved in data processing at all stages from data gathering to decision making.
Book Synopsis Variable Neighborhood Search by : Angelo Sifaleras
Download or read book Variable Neighborhood Search written by Angelo Sifaleras and published by Springer. This book was released on 2019-03-13 with total page 327 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed post-conference proceedings of the 6th International Conference on Variable Neighborhood Search, ICVNS 2018, held in Sithonia, Greece, in October 2018. ICVNS 2018 received 49 submissions of which 23 full papers were carefully reviewed and selected. VNS is a metaheuristic based on systematic changes in the neighborhood structure within a search for solving optimization problems and related tasks. The main goal of ICVNS 2018 was to provide a stimulating environment in which researchers coming from various scientific fields could share and discuss their knowledge, expertise, and ideas related to the VNS metaheuristic and its applications.
