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The Complexity Of Boolean Networks
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Book Synopsis Probabilistic Boolean Networks by : Ilya Shmulevich
Download or read book Probabilistic Boolean Networks written by Ilya Shmulevich and published by SIAM. This book was released on 2010-01-21 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Book Synopsis The Complexity of Boolean Networks by : Paul E. Dunne
Download or read book The Complexity of Boolean Networks written by Paul E. Dunne and published by . This book was released on 1988 with total page 526 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis The Complexity of Boolean Functions by : Ingo Wegener
Download or read book The Complexity of Boolean Functions written by Ingo Wegener and published by . This book was released on 1987 with total page 502 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Algorithms For Analysis, Inference, And Control Of Boolean Networks by : Akutsu Tatsuya
Download or read book Algorithms For Analysis, Inference, And Control Of Boolean Networks written by Akutsu Tatsuya and published by World Scientific. This book was released on 2018-02-13 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Boolean network (BN) is a mathematical model of genetic networks and other biological networks. Although extensive studies have been done on BNs from a viewpoint of complex systems, not so many studies have been undertaken from a computational viewpoint. This book presents rigorous algorithmic results on important computational problems on BNs, which include inference of a BN, detection of singleton and periodic attractors in a BN, and control of a BN. This book also presents algorithmic results on fundamental computational problems on probabilistic Boolean networks and a Boolean model of metabolic networks. Although most contents of the book are based on the work by the author and collaborators, other important computational results and techniques are also reviewed or explained. Contents: Preliminaries Boolean Networks Detection of Attractors Detection of Singleton Attractors Detection of Periodic Attractors Identification of Boolean Networks Control of Boolean Networks Predecessor and Observability Problems Semi-Tensor Product Approach Analysis of Metabolic Networks Probabilistic Boolean Networks Identification of Probabilistic Boolean Networks Control of Probabilistic Boolean Networks Readership: Graduate students and researchers working on string theory and related topics. Keywords: Boolean Networks;Bioinformatics;Systems Biology;Combinatorial Algorithms;AttractorsReview: Key Features: Unique book focusing on computational aspects of Boolean networks Provide computational foundations on Boolean networks Contain recent and up-to-date results on algorithms for Boolean networks
Book Synopsis Analysis and Control of Boolean Networks by : Daizhan Cheng
Download or read book Analysis and Control of Boolean Networks written by Daizhan Cheng and published by Springer Science & Business Media. This book was released on 2010-11-23 with total page 474 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Book Synopsis Algebraic Biology by : Katsuhisa Horimoto
Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer Science & Business Media. This book was released on 2008-07-18 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Book Synopsis Dynamics of Complex Autonomous Boolean Networks by : David P. Rosin
Download or read book Dynamics of Complex Autonomous Boolean Networks written by David P. Rosin and published by Springer. This book was released on 2014-12-31 with total page 208 pages. Available in PDF, EPUB and Kindle. Book excerpt: This thesis focuses on the dynamics of autonomous Boolean networks, on the basis of Boolean logic functions in continuous time without external clocking. These networks are realized with integrated circuits on an electronic chip as a field programmable gate array (FPGA) with roughly 100,000 logic gates, offering an extremely flexible model system. It allows fast and cheap design cycles and large networks with arbitrary topologies and coupling delays. The author presents pioneering results on theoretical modeling, experimental realization, and selected applications. In this regard, three classes of novel dynamic behavior are investigated: (i) Chaotic Boolean networks are proposed as high-speed physical random number generators with high bit rates. (ii) Networks of periodic Boolean oscillators are home to long-living transient chimera states, i.e., novel patterns of coexisting domains of spatially coherent (synchronized) and incoherent (desynchronized) dynamics. (iii) Excitable networks exhibit cluster synchronization and can be used as fast artificial Boolean neurons whose spiking patterns can be controlled. This work presents the first experimental platform for large complex networks, which will facilitate exciting future developments.
Download or read book Boolean Functions written by Yves Crama and published by Cambridge University Press. This book was released on 2011-05-16 with total page 711 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by prominent experts in the field, this monograph provides the first comprehensive, unified presentation of the structural, algorithmic and applied aspects of the theory of Boolean functions. The book focuses on algebraic representations of Boolean functions, especially disjunctive and conjunctive normal form representations. This framework looks at the fundamental elements of the theory (Boolean equations and satisfiability problems, prime implicants and associated short representations, dualization), an in-depth study of special classes of Boolean functions (quadratic, Horn, shellable, regular, threshold, read-once functions and their characterization by functional equations) and two fruitful generalizations of the concept of Boolean functions (partially defined functions and pseudo-Boolean functions). Several topics are presented here in book form for the first time. Because of the depth and breadth and its emphasis on algorithms and applications, this monograph will have special appeal for researchers and graduate students in discrete mathematics, operations research, computer science, engineering and economics.
Book Synopsis SOFSEM 2021: Theory and Practice of Computer Science by : Tomas Bures
Download or read book SOFSEM 2021: Theory and Practice of Computer Science written by Tomas Bures and published by . This book was released on 2021 with total page 624 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book contains the invited and contributed papers selected for presentation at SOFSEM 2021, the 47th International Conference on Current Trends in Theory and Practice of Computer Science, which was held online during January 25-28, 2021, hosted by the Free University of Bozen-Bolzano, Italy. The 33 full and 7 short papers included in the volume were carefully reviewed and selected from 100 submissions. They were organized in topical sections on: foundations of computer science; foundations of software engineering; foundations of data science and engineering; and foundations of algorithmic computational biology. The book also contains 5 invited papers.
Book Synopsis Boolean Models and Methods in Mathematics, Computer Science, and Engineering by : Yves Crama
Download or read book Boolean Models and Methods in Mathematics, Computer Science, and Engineering written by Yves Crama and published by Cambridge University Press. This book was released on 2010-06-28 with total page 781 pages. Available in PDF, EPUB and Kindle. Book excerpt: A collection of papers written by prominent experts that examine a variety of advanced topics related to Boolean functions and expressions.
Book Synopsis Information Processing and Biological Systems by : Samuli Niiranen
Download or read book Information Processing and Biological Systems written by Samuli Niiranen and published by Springer Science & Business Media. This book was released on 2011-03-10 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt: Living beings require constant information processing for survival. In cells, information is being processed and propagated at various levels, from the gene regulatory network to chemical pathways, to the interaction with the environment. How this is achieved and how information is coded is still poorly understood. For example, what a cell interprets as information in the temporal level of an mRNA and what is interpreted as noise remains an open question. Recently, information theoretical methods and other tools, developed in the context of engineering and natural sciences, have been applied to study diverse biological processes. This book covers the latest findings on how information is processed in various biological processes, ranging from information processing and propagation in gene regulatory networks to information processing in natural language. An overview is presented of the state-of-the-art in information processing in biological systems and the opinion of current leaders in this research field on future research directions.
Book Synopsis An Introduction to Semi-tensor Product of Matrices and Its Applications by : Dai-Zhan Cheng
Download or read book An Introduction to Semi-tensor Product of Matrices and Its Applications written by Dai-Zhan Cheng and published by World Scientific. This book was released on 2012 with total page 610 pages. Available in PDF, EPUB and Kindle. Book excerpt: A generalization of Conventional Matrix Product (CMP), called the Semi-Tensor Product (STP), is proposed. It extends the CMP to two arbitrary matrices and maintains all fundamental properties of CMP. In addition, it has a pseudo-commutative property, which makes it more superior to CMP. The STP was proposed by the authors to deal with higher-dimensional data as well as multilinear mappings. After over a decade of development, STP has been proven to be a powerful tool in dealing with nonlinear and logical calculations.This book is a comprehensive introduction to the theory of STP and its various applications, including logical function, fuzzy control, Boolean networks, analysis and control of nonlinear systems, amongst others.
Download or read book Digraphs written by Jorgen Bang-Jensen and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 769 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of directed graphs (digraphs) has developed enormously over recent decades, yet the results are rather scattered across the journal literature. This is the first book to present a unified and comprehensive survey of the subject. In addition to covering the theoretical aspects, the authors discuss a large number of applications and their generalizations to topics such as the traveling salesman problem, project scheduling, genetics, network connectivity, and sparse matrices. Numerous exercises are included. For all graduate students, researchers and professionals interested in graph theory and its applications, this book will be essential reading.
Book Synopsis Handbook on Biological Networks by : Stefano Boccaletti
Download or read book Handbook on Biological Networks written by Stefano Boccaletti and published by World Scientific. This book was released on 2010 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research ? the study of complex networks. In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology.
Book Synopsis Complexity, Entropy And The Physics Of Information by : Wojciech H. Zurek
Download or read book Complexity, Entropy And The Physics Of Information written by Wojciech H. Zurek and published by CRC Press. This book was released on 2018-03-08 with total page 545 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book has emerged from a meeting held during the week of May 29 to June 2, 1989, at St. John’s College in Santa Fe under the auspices of the Santa Fe Institute. The (approximately 40) official participants as well as equally numerous “groupies” were enticed to Santa Fe by the above “manifesto.” The book—like the “Complexity, Entropy and the Physics of Information” meeting explores not only the connections between quantum and classical physics, information and its transfer, computation, and their significance for the formulation of physical theories, but it also considers the origins and evolution of the information-processing entities, their complexity, and the manner in which they analyze their perceptions to form models of the Universe. As a result, the contributions can be divided into distinct sections only with some difficulty. Indeed, I regard this degree of overlapping as a measure of the success of the meeting. It signifies consensus about the important questions and on the anticipated answers: they presumably lie somewhere in the “border territory,” where information, physics, complexity, quantum, and computation all meet.
Book Synopsis Discrete Iterations by : Francois Robert
Download or read book Discrete Iterations written by Francois Robert and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: a c 9 h In presenting this monograph, I would like to indicate both its orientation as well as my personal reasons for being interested in discrete iterations (that is, iterations on a generally very large,jinite set). While working in numerical analysis I have been interested in two main aspects: - the algorithmic aspect: an iterative algorithm is a mathematical entity which behaves in a dynamic fashion. Even if it is started far from a solution, it will often tend to get closer and closer. - the mathematical aspect: this consists of a coherent and rigorous analy sis of convergence, with the aid of mathematical tools (these tools are mainly the use of norms for convergence proofs, the use of matrix algebra and so on). One may for example refer to the algorithmic and mathematical aspects of Newton's method in JRn as well as to the QR algorithm for eigenvalues of matrices. These two algorithms seem to me to be the most fascinating algorithms in numerical analysis, since both show a remarkable practical efficiency even though there exist relatively few global convergence results for them.
Book Synopsis Computing with Foresight and Industry by : Florin Manea
Download or read book Computing with Foresight and Industry written by Florin Manea and published by Springer. This book was released on 2019-06-19 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 15th Conference on Computability in Europe, CiE 2019, held in Durham, UK, in July 2019. The 20 revised full papers presented were carefully reviewed and selected from 35 submissions. In addition, this volume includes 7 invited papers. The conference CiE 2018 had the following six special sessions: computational neuroscience, history and philosophy of computing, lowness notions in computability, probabilistic programming and higher-order computation, smoothed and probabilistic analysis of algorithms, and transnite computations.
