Serial Analysis Of Gene Expression Sage

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Serial Analysis of Gene Expression (SAGE)

Author : Kåre Lehmann Nielsen
Publisher : Springer Science & Business Media
ISBN 13 : 1588296768
Total Pages : 213 pages
Book Rating : 4.5/5 (882 download)

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Book Synopsis Serial Analysis of Gene Expression (SAGE) by : Kåre Lehmann Nielsen

Download or read book Serial Analysis of Gene Expression (SAGE) written by Kåre Lehmann Nielsen and published by Springer Science & Business Media. This book was released on 2008 with total page 213 pages. Available in PDF, EPUB and Kindle. Book excerpt: Serial Analysis of Gene Expression (SAGE): Digital Gene Expression Profiling facilitates the introduction of SAGE into the laboratory, and provides a framework for interpreting and comparing data derived from SAGE experiments. Of the several methods of genetic profiling available, only SAGE measures the expression of both known and unknown genes. SAGE studies encompass 50,000 tags and can provide detailed knowledge of the 2000 most highly expressed genes in the tissue sample. The SAGE protocols presented are detailed, fully annotated, and tested, and are all written by experienced SAGE researchers from around the world. Part 1 is dedicated to experimental procedures of SAGE and related methods including aRNA LongSAGE, SuperSAGE, DeepSAGE, and GMAT. Part 2 provides methods for extraction and filtration of tags, analysis of ditag populations, and completing statistically correct comparisons of gene expression profiles. Comparative transcriptomics enables scientists to understand the underlying genetics of biological changes such as development, disease, crop yield, and resistance. SAGE analysis is also used to obtain unknown tags, which can be used as gene-specific primers in Rapid Amplification of cDNA Ends (RACE) reactions to generate full-length transcripts for cloning and sequencing. This book will be an indispensable tool for any lab engaged in genetic profiling and comparative transcriptomics, and will help many laboratories to successfully implement tag-based sequencing methods and procedures and obtain comprehensive, useful, and interpretative data.

Genomics-Assisted Crop Improvement

Author : R.K. Varshney
Publisher : Springer Science & Business Media
ISBN 13 : 1402062958
Total Pages : 405 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Genomics-Assisted Crop Improvement by : R.K. Varshney

Download or read book Genomics-Assisted Crop Improvement written by R.K. Varshney and published by Springer Science & Business Media. This book was released on 2007-12-12 with total page 405 pages. Available in PDF, EPUB and Kindle. Book excerpt: This superb volume provides a critical assessment of genomics tools and approaches for crop breeding. Volume 1 presents the status and availability of genomic resources and platforms, and also devises strategies and approaches for effectively exploiting genomics research. Volume 2 goes into detail on a number of case studies of several important crop and plant species that summarize both the achievements and limitations of genomics research for crop improvement.

Cardiac Gene Expression

Author : Jun Zhang
Publisher : Humana Press
ISBN 13 : 9781588293527
Total Pages : 366 pages
Book Rating : 4.2/5 (935 download)

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Book Synopsis Cardiac Gene Expression by : Jun Zhang

Download or read book Cardiac Gene Expression written by Jun Zhang and published by Humana Press. This book was released on 2007-03-19 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents both cutting-edge and established methods for studying cardiac gene expression. The protocols provide a template for solid research, and cover the process through screening, analysis, characterization, and functional confirmation of novel genes or known genes with a new function. The concluding section of the book highlights methods that facilitate overexpression or cardiac-specific targeted gene deletion.

Data Mining for Biomedical Applications

Author : Jinyan Li
Publisher : Springer Science & Business Media
ISBN 13 : 3540331042
Total Pages : 163 pages
Book Rating : 4.5/5 (43 download)

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Book Synopsis Data Mining for Biomedical Applications by : Jinyan Li

Download or read book Data Mining for Biomedical Applications written by Jinyan Li and published by Springer Science & Business Media. This book was released on 2006-03-23 with total page 163 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the International Workshop on Data Mining for Biomedical Applications, BioDM 2006, held in Singapore in conjunction with the 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2006). The 14 revised full papers presented together with one keynote talk were carefully reviewed and selected from 35 submissions. The papers are organized in topical sections

Transcript Profiling in Rice Using Serial Analysis of Gene Expression (SAGE) Technology

Author : J. George Gibbings
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (591 download)

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Book Synopsis Transcript Profiling in Rice Using Serial Analysis of Gene Expression (SAGE) Technology by : J. George Gibbings

Download or read book Transcript Profiling in Rice Using Serial Analysis of Gene Expression (SAGE) Technology written by J. George Gibbings and published by . This book was released on 2003 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Omics in Plant Breeding

Author : Aluízio Borém
Publisher : John Wiley & Sons
ISBN 13 : 1118820843
Total Pages : 253 pages
Book Rating : 4.1/5 (188 download)

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Book Synopsis Omics in Plant Breeding by : Aluízio Borém

Download or read book Omics in Plant Breeding written by Aluízio Borém and published by John Wiley & Sons. This book was released on 2014-06-03 with total page 253 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational and high-throughput methods, such as genomics, proteomics, and transcriptomics, known collectively as “-omics,” have been used to study plant biology for well over a decade now. As these technologies mature, plant and crop scientists have started using these methods to improve crop varieties. Omics in Plant Breeding provides a timely introduction to key omicsbased methods and their application in plant breeding. Omics in Plant Breeding is a practical and accessible overview of specific omics-based methods ranging from metabolomics to phenomics. Covering a single methodology within each chapter, this book provides thorough coverage that ensures a strong understanding of each methodology both in its application to, and improvement of, plant breeding. Accessible to advanced students, researchers, and professionals, Omics in Plant Breeding will be an essential entry point into this innovative and exciting field. • A valuable overview of high-throughput, genomics-based technologies and their applications to plant breeding • Each chapter explores a single methodology, allowing for detailed and thorough coverage • Coverage ranges from well-established methodologies, such as genomics and proteomics, to emerging technologies, including phenomics and physionomics Aluízio Borém is a Professor of Plant Breeding at the University of Viçosa in Brazil. Roberto Fritsche-Neto is a Professor of Genetics and Plant Breeding at the University of São Paulo in Brazil.

SAGEmap

Author :
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (833 download)

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Book Synopsis SAGEmap by :

Download or read book SAGEmap written by and published by . This book was released on 2002 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: A SAGE data resource for the query and retrieval and analysis of SAGE data from any organism.

Cancer and Noncoding RNAs

Author : Jayprokas Chakrabarti
Publisher : Academic Press
ISBN 13 : 0128134372
Total Pages : 578 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Cancer and Noncoding RNAs by : Jayprokas Chakrabarti

Download or read book Cancer and Noncoding RNAs written by Jayprokas Chakrabarti and published by Academic Press. This book was released on 2017-10-13 with total page 578 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cancer and Noncoding RNAs offers an in-depth exploration of noncoding RNAs and their role in epigenetic regulation of complex human disease, most notably cancer. In addition to examining microRNAs, this volume provides a unique evaluation of more recently profiled noncoding RNAs now implicated in carcinogenesis, including lncRNAs, piRNAs, circRNAs, and tRNAs, identifying differences in function between these noncoding RNAs and how they interact with the rest of the epigenome. A broad range of chapters from experts in the field detail epigenetic regulation of various cancer types, along with recent next generation sequencing technologies, genome-wide association studies (GWAS) and bioinformatics approaches. This book will help researchers in genomic medicine and cancer biology better understand the role of noncoding RNAs in epigenetics, aiding in the development of useful biomarkers for diagnosis, prognosis and new RNA-based disease therapies. Provides a comprehensive analysis of noncoding RNAs implicated in epigenetic regulation of gene expression and chromatin dynamics Educates researchers and graduate students by highlighting, in addition to miRNAs, a range of noncoding RNAs newly associated with carcinogenesis Applies current knowledge of noncoding RNAs and epigenomics towards developing cancer and RNA-based disease therapies Features contributions by leading experts in the field

The EM-algorithm for Modeling Serial Analysis of Gene Expression (SAGE) Data

Author : Michèle Ampe
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (91 download)

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Book Synopsis The EM-algorithm for Modeling Serial Analysis of Gene Expression (SAGE) Data by : Michèle Ampe

Download or read book The EM-algorithm for Modeling Serial Analysis of Gene Expression (SAGE) Data written by Michèle Ampe and published by . This book was released on 2007 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Molecular Pathology in Cancer Research

Author : Sunil R. Lakhani
Publisher : Springer
ISBN 13 : 149396643X
Total Pages : 369 pages
Book Rating : 4.4/5 (939 download)

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Book Synopsis Molecular Pathology in Cancer Research by : Sunil R. Lakhani

Download or read book Molecular Pathology in Cancer Research written by Sunil R. Lakhani and published by Springer. This book was released on 2017-01-20 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: The aim of the book is to discuss the application of molecular pathology in cancer research, and its contribution in the classification of different tumors and identification of potential molecular targets, as well as how this knowledge may be translated into clinical practice, and the huge impact this field is likely to have in the next 5 to 10 years.

Encyclopedia of Bioinformatics and Computational Biology

Author :
Publisher : Elsevier
ISBN 13 : 0128114320
Total Pages : 3421 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Encyclopedia of Bioinformatics and Computational Biology by :

Download or read book Encyclopedia of Bioinformatics and Computational Biology written by and published by Elsevier. This book was released on 2018-08-21 with total page 3421 pages. Available in PDF, EPUB and Kindle. Book excerpt: Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, Three Volume Set combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases

Knowledge-Based Bioinformatics

Author : Gil Alterovitz
Publisher : John Wiley & Sons
ISBN 13 : 1119995833
Total Pages : 306 pages
Book Rating : 4.1/5 (199 download)

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Book Synopsis Knowledge-Based Bioinformatics by : Gil Alterovitz

Download or read book Knowledge-Based Bioinformatics written by Gil Alterovitz and published by John Wiley & Sons. This book was released on 2011-04-20 with total page 306 pages. Available in PDF, EPUB and Kindle. Book excerpt: There is an increasing need throughout the biomedical sciences for a greater understanding of knowledge-based systems and their application to genomic and proteomic research. This book discusses knowledge-based and statistical approaches, along with applications in bioinformatics and systems biology. The text emphasizes the integration of different methods for analysing and interpreting biomedical data. This, in turn, can lead to breakthrough biomolecular discoveries, with applications in personalized medicine. Key Features: Explores the fundamentals and applications of knowledge-based and statistical approaches in bioinformatics and systems biology. Helps readers to interpret genomic, proteomic, and metabolomic data in understanding complex biological molecules and their interactions. Provides useful guidance on dealing with large datasets in knowledge bases, a common issue in bioinformatics. Written by leading international experts in this field. Students, researchers, and industry professionals with a background in biomedical sciences, mathematics, statistics, or computer science will benefit from this book. It will also be useful for readers worldwide who want to master the application of bioinformatics to real-world situations and understand biological problems that motivate algorithms.

Advances in Animal Genomics

Author : Sukanta Mondal
Publisher : Academic Press
ISBN 13 : 0128206128
Total Pages : 340 pages
Book Rating : 4.1/5 (282 download)

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Book Synopsis Advances in Animal Genomics by : Sukanta Mondal

Download or read book Advances in Animal Genomics written by Sukanta Mondal and published by Academic Press. This book was released on 2020-11-25 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Animal Genomics provides an outstanding collection of integrated strategies involving traditional and modern - omics (structural, functional, comparative and epigenomics) approaches and genomics-assisted breeding methods which animal biotechnologists can utilize to dissect and decode the molecular and gene regulatory networks involved in the complex quantitative yield and stress tolerance traits in livestock. Written by international experts on animal genomics, this book explores the recent advances in high-throughput, next-generation whole genome and transcriptome sequencing, array-based genotyping, and modern bioinformatics approaches which have enabled to produce huge genomic and transcriptomic resources globally on a genome-wide scale. This book is an important resource for researchers, students, educators and professionals in agriculture, veterinary and biotechnology sciences that enables them to solve problems regarding sustainable development with the help of current innovative biotechnologies. Integrates basic and advanced concepts of animal biotechnology and presents future developments Describes current high-throughput next-generation whole genome and transcriptome sequencing, array-based genotyping, and modern bioinformatics approaches for sustainable livestock production Illustrates integrated strategies to dissect and decode the molecular and gene regulatory networks involved in complex quantitative yield and stress tolerance traits in livestock Ensures readers will gain a strong grasp of biotechnology for sustainable livestock production with its well-illustrated discussion

Gene Quantification

Author : Francois Ferre
Publisher : Springer Science & Business Media
ISBN 13 : 1461241642
Total Pages : 379 pages
Book Rating : 4.4/5 (612 download)

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Book Synopsis Gene Quantification by : Francois Ferre

Download or read book Gene Quantification written by Francois Ferre and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 379 pages. Available in PDF, EPUB and Kindle. Book excerpt: Geneticists and molecular biologists have been interested in quantifying genes and their products for many years and for various reasons (Bishop, 1974). Early molecular methods were based on molecular hybridization, and were devised shortly after Marmur and Doty (1961) first showed that denaturation of the double helix could be reversed - that the process of molecular reassociation was exquisitely sequence dependent. Gillespie and Spiegelman (1965) developed a way of using the method to titrate the number of copies of a probe within a target sequence in which the target sequence was fixed to a membrane support prior to hybridization with the probe - typically a RNA. Thus, this was a precursor to many of the methods still in use, and indeed under development, today. Early examples of the application of these methods included the measurement of the copy numbers in gene families such as the ribosomal genes and the immunoglo bulin family. Amplification of genes in tumors and in response to drug treatment was discovered by this method. In the same period, methods were invented for estimating gene num bers based on the kinetics of the reassociation process - the so-called Cot analysis. This method, which exploits the dependence of the rate of reassociation on the concentration of the two strands, revealed the presence of repeated sequences in the DNA of higher eukaryotes (Britten and Kohne, 1968). An adaptation to RNA, Rot analysis (Melli and Bishop, 1969), was used to measure the abundance of RNAs in a mixed population.

SAGE

Author : San Ming Wang
Publisher : Taylor & Francis
ISBN 13 : 9781904933076
Total Pages : 375 pages
Book Rating : 4.9/5 (33 download)

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Book Synopsis SAGE by : San Ming Wang

Download or read book SAGE written by San Ming Wang and published by Taylor & Francis. This book was released on 2005 with total page 375 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the post-genomic era SAGE (Serial Analysis of Gene Expression) is one of the most powerful tools available for global expression profiling at the mRNA level (transcriptome analysis). SAGE is also a valuable tool for gene discovery and gene network identification. Written by recognized experts in the field, this timely and authoritative volume reviews every aspect of SAGE technology including the evaluation of SAGE, the improvement and further development of SAGE methodology, the statistical analysis and mathematical modeling of SAGE data, and the practical application of SAGE in eukaryotic organisms, stem cell research, brain cells analysis, and much more.

Molecular Plant Breeding

Author : Yunbi Xu
Publisher : CABI
ISBN 13 : 1845936248
Total Pages : 756 pages
Book Rating : 4.8/5 (459 download)

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Book Synopsis Molecular Plant Breeding by : Yunbi Xu

Download or read book Molecular Plant Breeding written by Yunbi Xu and published by CABI. This book was released on 2010 with total page 756 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in plant genomics and molecular biology have revolutionized our understanding of plant genetics, providing new opportunities for more efficient and controllable plant breeding. Successful techniques require a solid understanding of the underlying molecular biology as well as experience in applied plant breeding. Bridging the gap between developments in biotechnology and its applications in plant improvement, Molecular Plant Breeding provides an integrative overview of issues from basic theories to their applications to crop improvement including molecular marker technology, gene mapping, genetic transformation, quantitative genetics, and breeding methodology.

Animal Genomics for Animal Health

Author : Marie-Hélène Pinard
Publisher : Karger Medical and Scientific Publishers
ISBN 13 : 3805586191
Total Pages : 455 pages
Book Rating : 4.8/5 (55 download)

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Book Synopsis Animal Genomics for Animal Health by : Marie-Hélène Pinard

Download or read book Animal Genomics for Animal Health written by Marie-Hélène Pinard and published by Karger Medical and Scientific Publishers. This book was released on 2008-01-01 with total page 455 pages. Available in PDF, EPUB and Kindle. Book excerpt: "It includes a review of the state of the art in animal genomics and its applications to animal health. The contributions describe the new tools available, such as HapMaps for chicken and cattle, and show how the understanding of gene structure and function can be successfully applied to delineate the molecular mechanisms of disease and determine complex phenotypes associated with health traits. A critical evaluation of future needs and future applications of animal genomics is also presented. The integration of animal genomics in animal health research is likely to revolutionize the way scientists approach the challenges of discovering highly effective drugs and vaccines for animal diseases."--BOOK JACKET.