Qualitative Analysis of Biological Systems Using Algebraic Methods

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ISBN 13 :
Total Pages : 188 pages
Book Rating : 4.:/5 (8 download)

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Book Synopsis Qualitative Analysis of Biological Systems Using Algebraic Methods by : Wei Niu

Download or read book Qualitative Analysis of Biological Systems Using Algebraic Methods written by Wei Niu and published by . This book was released on 2011 with total page 188 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cette thèse est consacrée à l'analyse qualitative des systèmes biologiques, modélisés comme des systèmes d'équations différentielles ou d'équations aux différences, en utilisant des méthodes algébriques. Nous avons étudié les problèmes de la détection d'états d'équilibre, de l'analyse de stabilité et de différents types de bifurcations, et de la construction de cycles limites pour des modèles biologiques continus et discrets. Nous montrons comment réduire les problèmes de l'analyse qualitative aux problèmes de résolution de systèmes polynomiaux ou semi-algébriques. Ensuite, nous expliquons comment ces problèmes formulés peuvent être résolus en utilisant une approche algébrique basée sur les méthodes d'ensembles triangulaires, des bases de Gröbner, d'élimination des quantificateurs, et de l'isolement et la classification des solutions réelles. De nombreuses expériences ont été réalisées sur les modèles biologiques différents et certains d'entre eux ont été présentés dans cette thèse, en démontrant l'efficacité des méthodes algébriques pour l'analyse qualitative de ces modèles. Les statistiques de temps en forme de tableau ont également été fournies pour comparer les performances des différentes méthodes algébriques. Nous avons développé un progiciel Maple pour l'analyse qualitative des modèles biologiques. Pour le système d'auto-assemblage de micelle avec puits chimiques, un modèle biochimique plane non linéaire, sa stabilité, trois types de bifurcations, et cycles limites ont été analysés en détail. Les conditions algébriques exactes sur les paramètres de ce système sont dérivées pour décrire les types de bifurcations et la stabilité et les types des points de bifurcation.

Computer Algebra in Scientific Computing

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Publisher : Springer
ISBN 13 : 3642235689
Total Pages : 368 pages
Book Rating : 4.6/5 (422 download)

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Book Synopsis Computer Algebra in Scientific Computing by : Vladimir P. Gerdt

Download or read book Computer Algebra in Scientific Computing written by Vladimir P. Gerdt and published by Springer. This book was released on 2011-09-01 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 13th International Workshop on Computer Algebra in Scientific Computing, CASC 2011, held in Kassel, Germany, in September 2011. The 26 full papers included in the book were carefully reviewed and selected from numerous submissions. The articles are organized in topical sections on the development of object oriented computer algebra software for the modeling of algebraic structures as typed objects; matrix algorithms; the investigation with the aid of computer algebra; the development of symbolic-numerical algorithms; and the application of symbolic computations in applied problems of physics, mechanics, social science, and engineering.

Algebraic Biology

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Publisher : Springer Science & Business Media
ISBN 13 : 3540851003
Total Pages : 256 pages
Book Rating : 4.5/5 (48 download)

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Book Synopsis Algebraic Biology by : Katsuhisa Horimoto

Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer Science & Business Media. This book was released on 2008-07-18 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.

Algebraic and Discrete Mathematical Methods for Modern Biology

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Publisher : Academic Press
ISBN 13 : 0128012714
Total Pages : 383 pages
Book Rating : 4.1/5 (28 download)

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Book Synopsis Algebraic and Discrete Mathematical Methods for Modern Biology by : Raina Robeva

Download or read book Algebraic and Discrete Mathematical Methods for Modern Biology written by Raina Robeva and published by Academic Press. This book was released on 2015-05-09 with total page 383 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by experts in both mathematics and biology, Algebraic and Discrete Mathematical Methods for Modern Biology offers a bridge between math and biology, providing a framework for simulating, analyzing, predicting, and modulating the behavior of complex biological systems. Each chapter begins with a question from modern biology, followed by the description of certain mathematical methods and theory appropriate in the search of answers. Every topic provides a fast-track pathway through the problem by presenting the biological foundation, covering the relevant mathematical theory, and highlighting connections between them. Many of the projects and exercises embedded in each chapter utilize specialized software, providing students with much-needed familiarity and experience with computing applications, critical components of the "modern biology" skill set. This book is appropriate for mathematics courses such as finite mathematics, discrete structures, linear algebra, abstract/modern algebra, graph theory, probability, bioinformatics, statistics, biostatistics, and modeling, as well as for biology courses such as genetics, cell and molecular biology, biochemistry, ecology, and evolution. Examines significant questions in modern biology and their mathematical treatments Presents important mathematical concepts and tools in the context of essential biology Features material of interest to students in both mathematics and biology Presents chapters in modular format so coverage need not follow the Table of Contents Introduces projects appropriate for undergraduate research Utilizes freely accessible software for visualization, simulation, and analysis in modern biology Requires no calculus as a prerequisite Provides a complete Solutions Manual Features a companion website with supplementary resources

Algebraic Biology

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Publisher : Springer
ISBN 13 : 3540851011
Total Pages : 256 pages
Book Rating : 4.5/5 (48 download)

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Book Synopsis Algebraic Biology by : Katsuhisa Horimoto

Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer. This book was released on 2008-07-30 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the proceedings of the Third International Conference on Algebraic Biology (AB 2008). Jointly organized by the National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, and the Research Institute for Symbolic Computation (RISC), Hagenberg, Austria, it was held from July 31 to August 2, 2008 in the Castle of Hagenberg. Algebraic biology is an interdisciplinary forum for research on all aspects of applying symbolic computation in biology. The ?rst conference on algebraic biology (AB 2005) was held November 28–30, 2005 in Tokyo, the second during July 2–4, 2007 in Hagenberg. The AB conference series is intended as a bridge between life sciences and symbolic computation: On the one hand, new insights inbiologyarefoundbypowerfulsymbolicmethods;ontheotherhand,biological problems suggestnew algebraicstructures andalgorithms.While this pro?le has been established in the previous proceedings, the papers in the present volume demonstrate the continuous growth of algebraic biology. We received 27 submissions from 14 countries (Australia, Austria, Canada, China, Colombia, France, Germany, Italy, Japan, Norway, Russia, Switzerland, UK, USA), and 14 papers were accepted for publication. Each submission was assigned to at least three ProgramCommittee members, who carefully reviewed the papers, in many cases with the help of external referees. The reviews were discussedby the ProgramCommittee for oneweekvia the EasyChairconference management system.

Algebraic and Numeric Biology

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Publisher : Springer
ISBN 13 : 3642280676
Total Pages : 193 pages
Book Rating : 4.6/5 (422 download)

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Book Synopsis Algebraic and Numeric Biology by : Katsuhisa Horimoto

Download or read book Algebraic and Numeric Biology written by Katsuhisa Horimoto and published by Springer. This book was released on 2012-01-13 with total page 193 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 4th International Conference on Algebraic Biology, ANB 2010, held at the Castle of Hagenberg, Austria in July/August 2010. The conference is a follow up of the AB Conference. The 10 papers were carefully reviewed and selected from numerous submissions. The papers are organized in topical sections on mathematical modeling, system analysis and design, genomics, molecular structure analysis, automata theory, artificial intelligence, sequence analysis, automated reasoning, formal language and hybrid symbolic numerical methods.

Algebraic and Numeric Biology

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Publisher : Springer Science & Business Media
ISBN 13 : 3642280668
Total Pages : 193 pages
Book Rating : 4.6/5 (422 download)

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Book Synopsis Algebraic and Numeric Biology by : Katsuhisa Horimoto

Download or read book Algebraic and Numeric Biology written by Katsuhisa Horimoto and published by Springer Science & Business Media. This book was released on 2012-02-14 with total page 193 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 4th International Conference on Algebraic Biology, ANB 2010, held at the Castle of Hagenberg, Austria in July/August 2010. The conference is a follow up of the AB Conference. The 10 papers were carefully reviewed and selected from numerous submissions. The papers are organized in topical sections on mathematical modeling, system analysis and design, genomics, molecular structure analysis, automata theory, artificial intelligence, sequence analysis, automated reasoning, formal language and hybrid symbolic numerical methods.

Computational Methods in Systems Biology

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Publisher : Springer Science & Business Media
ISBN 13 : 3540006052
Total Pages : 224 pages
Book Rating : 4.5/5 (4 download)

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Book Synopsis Computational Methods in Systems Biology by : Corrado Priami

Download or read book Computational Methods in Systems Biology written by Corrado Priami and published by Springer Science & Business Media. This book was released on 2003-02-07 with total page 224 pages. Available in PDF, EPUB and Kindle. Book excerpt: Rovereto,December2002 CorradoPriami ProgrammeCommitteeofCMSB 2003 CorradoPriami(Chair),UniversityofTrento(Italy), CharlesAu?ray,CNRS,Villejuif(France), CosimaBaldari,Universit`adiSiena(Italy), AlexanderBockmayr,Universit ́eHenriPoincar ́e(France), LucaCardelli,MicrosoftResearchCambridge(UK), VincentDanos,Universit ́eParisVII(France), PierpaoloDegano,Universitad ` iPisa(Italy), Francois ̧ Fages,INRIA,Rocquencourt(France), DrabløsFinn,NorwegianUniversityofScienceandTechnology,Trondheim(N- way), MonikaHeiner,BrandenburgUniversityofTechnologyatCottbus(Germany), InaKoch,UniversityofAppliedSciencesBerlin,(Germany), JohnE.

Qualitative Analysis and Control of Complex Neural Networks with Delays

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Publisher : Springer
ISBN 13 : 3662474840
Total Pages : 398 pages
Book Rating : 4.6/5 (624 download)

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Book Synopsis Qualitative Analysis and Control of Complex Neural Networks with Delays by : Zhanshan Wang

Download or read book Qualitative Analysis and Control of Complex Neural Networks with Delays written by Zhanshan Wang and published by Springer. This book was released on 2015-07-18 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on the stability of the dynamical neural system, synchronization of the coupling neural system and their applications in automation control and electrical engineering. The redefined concept of stability, synchronization and consensus are adopted to provide a better explanation of the complex neural network. Researchers in the fields of dynamical systems, computer science, electrical engineering and mathematics will benefit from the discussions on complex systems. The book will also help readers to better understand the theory behind the control technique and its design.

Systems Biology Modelling and Analysis

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Publisher : John Wiley & Sons
ISBN 13 : 1119716586
Total Pages : 468 pages
Book Rating : 4.1/5 (197 download)

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Book Synopsis Systems Biology Modelling and Analysis by : Elisabetta De Maria

Download or read book Systems Biology Modelling and Analysis written by Elisabetta De Maria and published by John Wiley & Sons. This book was released on 2022-11-18 with total page 468 pages. Available in PDF, EPUB and Kindle. Book excerpt: Systems Biology Modelling and Analysis Describes important modelling and computational methods for systems biology research to enable practitioners to select and use the most suitable technique Systems Biology Modelling and Analysis provides an overview of state-of-the-art techniques and introduces related tools and practices to formalize models and automate reasoning for systems biology. The authors present and compare the main formal methods used in systems biology for modelling biological networks, including discussion of their advantages, drawbacks, and main applications. Each chapter includes an intuitive presentation of the specific formalism, a brief history of the formalism and of its applications in systems biology, a formal description of the formalism and its variants, at least one realistic case study, some applications of formal techniques to validate and make deep analysis of models encoded with the formalism, and a discussion on the kind of biological systems for which the formalism is suited, along with concrete ideas on its possible evolution. Edited by a highly qualified expert with significant experience in the field, some of the methods and techniques covered in Systems Biology Modelling and Analysis include: Petri nets, an important tool for studying different aspects of biological systems, ranging from simple signaling pathways to metabolic networks and beyond Pathway Logic, a formal, rule-based system and interactive viewer for developing executable models of cellular processes Boolean networks, a mathematical model which has been widely used for decades in the context of biological regulation networks Answer Set Programming (ASP), which has proven to be a strong logic programming paradigm to deal with the inherent complexity of biological models For systems biologists, biochemists, bioinformaticians, molecular biologists, pharmacologists, and computer scientists, Systems Biology Modelling and Analysis is a comprehensive all-in-one resource to understand and harness the field’s current models and techniques while also preparing for their potential developments in coming years with the help of the author’s expert insight.

Computational Methods in Systems Biology

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Publisher : Springer Science & Business Media
ISBN 13 : 3642038441
Total Pages : 337 pages
Book Rating : 4.6/5 (42 download)

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Book Synopsis Computational Methods in Systems Biology by : Pierpaolo Degano

Download or read book Computational Methods in Systems Biology written by Pierpaolo Degano and published by Springer Science & Business Media. This book was released on 2009-08-17 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 7th International Conference on Computational Methods in Systems Biology, CMSB 2009, held in Bologna, Italy, August 31 - September 1, 2009. The 18 revised full papers presented together with the summaries of 3 invited papers were carefully reviewed and selected from more than 45 submissions. The papers cover theoretical or applied contributions that are motivated by a biological question focusing on modeling approaches, including process algebra, simulation approaches, analysis methods, in particular model checking and flux analysis, and case studies.

Modeling Life

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Publisher : Springer
ISBN 13 : 3319597310
Total Pages : 456 pages
Book Rating : 4.3/5 (195 download)

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Book Synopsis Modeling Life by : Alan Garfinkel

Download or read book Modeling Life written by Alan Garfinkel and published by Springer. This book was released on 2017-09-06 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book develops the mathematical tools essential for students in the life sciences to describe interacting systems and predict their behavior. From predator-prey populations in an ecosystem, to hormone regulation within the body, the natural world abounds in dynamical systems that affect us profoundly. Complex feedback relations and counter-intuitive responses are common in nature; this book develops the quantitative skills needed to explore these interactions. Differential equations are the natural mathematical tool for quantifying change, and are the driving force throughout this book. The use of Euler’s method makes nonlinear examples tractable and accessible to a broad spectrum of early-stage undergraduates, thus providing a practical alternative to the procedural approach of a traditional Calculus curriculum. Tools are developed within numerous, relevant examples, with an emphasis on the construction, evaluation, and interpretation of mathematical models throughout. Encountering these concepts in context, students learn not only quantitative techniques, but how to bridge between biological and mathematical ways of thinking. Examples range broadly, exploring the dynamics of neurons and the immune system, through to population dynamics and the Google PageRank algorithm. Each scenario relies only on an interest in the natural world; no biological expertise is assumed of student or instructor. Building on a single prerequisite of Precalculus, the book suits a two-quarter sequence for first or second year undergraduates, and meets the mathematical requirements of medical school entry. The later material provides opportunities for more advanced students in both mathematics and life sciences to revisit theoretical knowledge in a rich, real-world framework. In all cases, the focus is clear: how does the math help us understand the science?

Computer Algebra in Scientific Computing

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Publisher : Springer Nature
ISBN 13 : 3031417240
Total Pages : 441 pages
Book Rating : 4.0/5 (314 download)

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Book Synopsis Computer Algebra in Scientific Computing by : François Boulier

Download or read book Computer Algebra in Scientific Computing written by François Boulier and published by Springer Nature. This book was released on 2023-08-23 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 25th International Workshop on Computer Algebra in Scientific Computing, CASC 2023, which took place in Havana, Cuba, during August 28-September 1, 2023. The 22 full papers included in this book were carefully reviewed and selected from 29 submissions. They focus on the theory of symbolic computation and its implementation in computer algebra systems as well as all other areas of scientific computing with regard to their benefit from or use of computer algebra methods and software.

Normal Mode Analysis

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Publisher : CRC Press
ISBN 13 : 142003507X
Total Pages : 448 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Normal Mode Analysis by : Qiang Cui

Download or read book Normal Mode Analysis written by Qiang Cui and published by CRC Press. This book was released on 2005-12-12 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: Rapid developments in experimental techniques continue to push back the limits in the resolution, size, and complexity of the chemical and biological systems that can be investigated. This challenges the theoretical community to develop innovative methods for better interpreting experimental results. Normal Mode Analysis (NMA) is one such technique

Understanding Complex Biological Systems with Mathematics

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Publisher : Springer
ISBN 13 : 3319980831
Total Pages : 207 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis Understanding Complex Biological Systems with Mathematics by : Ami Radunskaya

Download or read book Understanding Complex Biological Systems with Mathematics written by Ami Radunskaya and published by Springer. This book was released on 2018-10-24 with total page 207 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume examines a variety of biological and medical problems using mathematical models to understand complex system dynamics. Featured topics include autism spectrum disorder, ectoparasites and allogrooming, argasid ticks dynamics, super-fast nematocyst firing, cancer-immune population dynamics, and the spread of disease through populations. Applications are investigated with mathematical models using a variety of techniques in ordinary and partial differential equations, difference equations, Markov-chain models, Monte-Carlo simulations, network theory, image analysis, and immersed boundary method. Each article offers a thorough explanation of the methodologies used and numerous tables and color illustrations to explain key results. This volume is suitable for graduate students and researchers interested in current applications of mathematical models in the biosciences. The research featured in this volume began among newly-formed collaborative groups at the 2017 Women Advancing Mathematical Biology Workshop that took place at the Mathematical Biosciences Institute in Columbus, Ohio. The groups spent one intensive week working at MBI and continued their collaborations after the workshop, resulting in the work presented in this volume.

Frontiers of Statistical Decision Making and Bayesian Analysis

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Publisher : Springer Science & Business Media
ISBN 13 : 1441969446
Total Pages : 631 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Frontiers of Statistical Decision Making and Bayesian Analysis by : Ming-Hui Chen

Download or read book Frontiers of Statistical Decision Making and Bayesian Analysis written by Ming-Hui Chen and published by Springer Science & Business Media. This book was released on 2010-07-24 with total page 631 pages. Available in PDF, EPUB and Kindle. Book excerpt: Research in Bayesian analysis and statistical decision theory is rapidly expanding and diversifying, making it increasingly more difficult for any single researcher to stay up to date on all current research frontiers. This book provides a review of current research challenges and opportunities. While the book can not exhaustively cover all current research areas, it does include some exemplary discussion of most research frontiers. Topics include objective Bayesian inference, shrinkage estimation and other decision based estimation, model selection and testing, nonparametric Bayes, the interface of Bayesian and frequentist inference, data mining and machine learning, methods for categorical and spatio-temporal data analysis and posterior simulation methods. Several major application areas are covered: computer models, Bayesian clinical trial design, epidemiology, phylogenetics, bioinformatics, climate modeling and applications in political science, finance and marketing. As a review of current research in Bayesian analysis the book presents a balance between theory and applications. The lack of a clear demarcation between theoretical and applied research is a reflection of the highly interdisciplinary and often applied nature of research in Bayesian statistics. The book is intended as an update for researchers in Bayesian statistics, including non-statisticians who make use of Bayesian inference to address substantive research questions in other fields. It would also be useful for graduate students and research scholars in statistics or biostatistics who wish to acquaint themselves with current research frontiers.

Transactions on Computational Systems Biology XII

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Publisher : Springer
ISBN 13 : 3642117120
Total Pages : 271 pages
Book Rating : 4.6/5 (421 download)

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Book Synopsis Transactions on Computational Systems Biology XII by : Rainer Breitling

Download or read book Transactions on Computational Systems Biology XII written by Rainer Breitling and published by Springer. This book was released on 2010-02-12 with total page 271 pages. Available in PDF, EPUB and Kindle. Book excerpt: LNCS 5945