Practical Guide To Principal Component Methods In R

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Practical Guide To Principal Component Methods in R

Author : Alboukadel KASSAMBARA
Publisher : STHDA
ISBN 13 : 1975721136
Total Pages : 171 pages
Book Rating : 4.9/5 (757 download)

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Book Synopsis Practical Guide To Principal Component Methods in R by : Alboukadel KASSAMBARA

Download or read book Practical Guide To Principal Component Methods in R written by Alboukadel KASSAMBARA and published by STHDA. This book was released on 2017-08-23 with total page 171 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although there are several good books on principal component methods (PCMs) and related topics, we felt that many of them are either too theoretical or too advanced. This book provides a solid practical guidance to summarize, visualize and interpret the most important information in a large multivariate data sets, using principal component methods in R. The visualization is based on the factoextra R package that we developed for creating easily beautiful ggplot2-based graphs from the output of PCMs. This book contains 4 parts. Part I provides a quick introduction to R and presents the key features of FactoMineR and factoextra. Part II describes classical principal component methods to analyze data sets containing, predominantly, either continuous or categorical variables. These methods include: Principal Component Analysis (PCA, for continuous variables), simple correspondence analysis (CA, for large contingency tables formed by two categorical variables) and Multiple CA (MCA, for a data set with more than 2 categorical variables). In Part III, you'll learn advanced methods for analyzing a data set containing a mix of variables (continuous and categorical) structured or not into groups: Factor Analysis of Mixed Data (FAMD) and Multiple Factor Analysis (MFA). Part IV covers hierarchical clustering on principal components (HCPC), which is useful for performing clustering with a data set containing only categorical variables or with a mixed data of categorical and continuous variables.

Complete Guide to 3D Plots in R

Author : Alboukadel KASSAMBARA
Publisher : Alboukadel KASSAMBARA
ISBN 13 :
Total Pages : 113 pages
Book Rating : 4./5 ( download)

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Book Synopsis Complete Guide to 3D Plots in R by : Alboukadel KASSAMBARA

Download or read book Complete Guide to 3D Plots in R written by Alboukadel KASSAMBARA and published by Alboukadel KASSAMBARA. This book was released on with total page 113 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a complete guide for visualizing a data in 3 dimensions (3D) using R software. It contains 2 main parts and 7 chapters describing how to draw static and interactive 3D plots. - The chapter 1 is about data preparation for 3D plot - In chapter 2, we describe how to create easily basic static 3D scatter plots. We provide R codes for changing: 1) main and axis titles; 2) the appearance of the plot (point colors, labels and shapes, legend position, ...) - Chapter 3 presents how to create advanced static 3D plots including 3D scatter plots with confidence interval, 3D line plots, 3D texts, 3D barplots, 3D histograms and 3D arrows. - Chapter 4 describes the required package for drawing interactive 3D plots. - In chapter 5, we show how to transform easily an existing static 3D plot into aninteractive 3D plot. - Chapter 6 provides many examples of R codes for creating interactive 3D scatter plotswith 3D regression surfaces and concentration ellipsoids. We describe also how to exportthese graphs as png or pdf files. - Chapter 7 presents a complete guide to RGL 3D visualization device system. We provide also R codes for creating a movie from RGL 3D scene and for exporting plot into an interactive HTML web file. Each chapter is organized as an independent quick start guide. This means that, you don’tneed to read the different chapters in sequence.

R for Political Data Science

Author : Francisco Urdinez
Publisher : CRC Press
ISBN 13 : 1000204510
Total Pages : 469 pages
Book Rating : 4.0/5 (2 download)

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Book Synopsis R for Political Data Science by : Francisco Urdinez

Download or read book R for Political Data Science written by Francisco Urdinez and published by CRC Press. This book was released on 2020-11-18 with total page 469 pages. Available in PDF, EPUB and Kindle. Book excerpt: R for Political Data Science: A Practical Guide is a handbook for political scientists new to R who want to learn the most useful and common ways to interpret and analyze political data. It was written by political scientists, thinking about the many real-world problems faced in their work. The book has 16 chapters and is organized in three sections. The first, on the use of R, is for those users who are learning R or are migrating from another software. The second section, on econometric models, covers OLS, binary and survival models, panel data, and causal inference. The third section is a data science toolbox of some the most useful tools in the discipline: data imputation, fuzzy merge of large datasets, web mining, quantitative text analysis, network analysis, mapping, spatial cluster analysis, and principal component analysis. Key features: Each chapter has the most up-to-date and simple option available for each task, assuming minimal prerequisites and no previous experience in R Makes extensive use of the Tidyverse, the group of packages that has revolutionized the use of R Provides a step-by-step guide that you can replicate using your own data Includes exercises in every chapter for course use or self-study Focuses on practical-based approaches to statistical inference rather than mathematical formulae Supplemented by an R package, including all data As the title suggests, this book is highly applied in nature, and is designed as a toolbox for the reader. It can be used in methods and data science courses, at both the undergraduate and graduate levels. It will be equally useful for a university student pursuing a PhD, political consultants, or a public official, all of whom need to transform their datasets into substantive and easily interpretable conclusions.

Applied Unsupervised Learning with R

Author : Alok Malik
Publisher : Packt Publishing Ltd
ISBN 13 : 1789951461
Total Pages : 320 pages
Book Rating : 4.7/5 (899 download)

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Book Synopsis Applied Unsupervised Learning with R by : Alok Malik

Download or read book Applied Unsupervised Learning with R written by Alok Malik and published by Packt Publishing Ltd. This book was released on 2019-03-27 with total page 320 pages. Available in PDF, EPUB and Kindle. Book excerpt: Design clever algorithms that discover hidden patterns and draw responses from unstructured, unlabeled data. Key FeaturesBuild state-of-the-art algorithms that can solve your business' problemsLearn how to find hidden patterns in your dataRevise key concepts with hands-on exercises using real-world datasetsBook Description Starting with the basics, Applied Unsupervised Learning with R explains clustering methods, distribution analysis, data encoders, and features of R that enable you to understand your data better and get answers to your most pressing business questions. This book begins with the most important and commonly used method for unsupervised learning - clustering - and explains the three main clustering algorithms - k-means, divisive, and agglomerative. Following this, you'll study market basket analysis, kernel density estimation, principal component analysis, and anomaly detection. You'll be introduced to these methods using code written in R, with further instructions on how to work with, edit, and improve R code. To help you gain a practical understanding, the book also features useful tips on applying these methods to real business problems, including market segmentation and fraud detection. By working through interesting activities, you'll explore data encoders and latent variable models. By the end of this book, you will have a better understanding of different anomaly detection methods, such as outlier detection, Mahalanobis distances, and contextual and collective anomaly detection. What you will learnImplement clustering methods such as k-means, agglomerative, and divisiveWrite code in R to analyze market segmentation and consumer behaviorEstimate distribution and probabilities of different outcomesImplement dimension reduction using principal component analysisApply anomaly detection methods to identify fraudDesign algorithms with R and learn how to edit or improve codeWho this book is for Applied Unsupervised Learning with R is designed for business professionals who want to learn about methods to understand their data better, and developers who have an interest in unsupervised learning. Although the book is for beginners, it will be beneficial to have some basic, beginner-level familiarity with R. This includes an understanding of how to open the R console, how to read data, and how to create a loop. To easily understand the concepts of this book, you should also know basic mathematical concepts, including exponents, square roots, means, and medians.

An Introduction to Applied Multivariate Analysis with R

Author : Brian Everitt
Publisher : Springer Science & Business Media
ISBN 13 : 1441996508
Total Pages : 284 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis An Introduction to Applied Multivariate Analysis with R by : Brian Everitt

Download or read book An Introduction to Applied Multivariate Analysis with R written by Brian Everitt and published by Springer Science & Business Media. This book was released on 2011-04-23 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: The majority of data sets collected by researchers in all disciplines are multivariate, meaning that several measurements, observations, or recordings are taken on each of the units in the data set. These units might be human subjects, archaeological artifacts, countries, or a vast variety of other things. In a few cases, it may be sensible to isolate each variable and study it separately, but in most instances all the variables need to be examined simultaneously in order to fully grasp the structure and key features of the data. For this purpose, one or another method of multivariate analysis might be helpful, and it is with such methods that this book is largely concerned. Multivariate analysis includes methods both for describing and exploring such data and for making formal inferences about them. The aim of all the techniques is, in general sense, to display or extract the signal in the data in the presence of noise and to find out what the data show us in the midst of their apparent chaos. An Introduction to Applied Multivariate Analysis with R explores the correct application of these methods so as to extract as much information as possible from the data at hand, particularly as some type of graphical representation, via the R software. Throughout the book, the authors give many examples of R code used to apply the multivariate techniques to multivariate data.

Machine Learning Essentials

Author : Alboukadel Kassambara
Publisher : STHDA
ISBN 13 : 1986406857
Total Pages : 211 pages
Book Rating : 4.9/5 (864 download)

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Book Synopsis Machine Learning Essentials by : Alboukadel Kassambara

Download or read book Machine Learning Essentials written by Alboukadel Kassambara and published by STHDA. This book was released on 2018-03-10 with total page 211 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discovering knowledge from big multivariate data, recorded every days, requires specialized machine learning techniques. This book presents an easy to use practical guide in R to compute the most popular machine learning methods for exploring real word data sets, as well as, for building predictive models. The main parts of the book include: A) Unsupervised learning methods, to explore and discover knowledge from a large multivariate data set using clustering and principal component methods. You will learn hierarchical clustering, k-means, principal component analysis and correspondence analysis methods. B) Regression analysis, to predict a quantitative outcome value using linear regression and non-linear regression strategies. C) Classification techniques, to predict a qualitative outcome value using logistic regression, discriminant analysis, naive bayes classifier and support vector machines. D) Advanced machine learning methods, to build robust regression and classification models using k-nearest neighbors methods, decision tree models, ensemble methods (bagging, random forest and boosting). E) Model selection methods, to select automatically the best combination of predictor variables for building an optimal predictive model. These include, best subsets selection methods, stepwise regression and penalized regression (ridge, lasso and elastic net regression models). We also present principal component-based regression methods, which are useful when the data contain multiple correlated predictor variables. F) Model validation and evaluation techniques for measuring the performance of a predictive model. G) Model diagnostics for detecting and fixing a potential problems in a predictive model. The book presents the basic principles of these tasks and provide many examples in R. This book offers solid guidance in data mining for students and researchers. Key features: - Covers machine learning algorithm and implementation - Key mathematical concepts are presented - Short, self-contained chapters with practical examples.

Practical Guide to Cluster Analysis in R

Author : Alboukadel Kassambara
Publisher : STHDA
ISBN 13 : 1542462703
Total Pages : 168 pages
Book Rating : 4.5/5 (424 download)

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Book Synopsis Practical Guide to Cluster Analysis in R by : Alboukadel Kassambara

Download or read book Practical Guide to Cluster Analysis in R written by Alboukadel Kassambara and published by STHDA. This book was released on 2017-08-23 with total page 168 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although there are several good books on unsupervised machine learning, we felt that many of them are too theoretical. This book provides practical guide to cluster analysis, elegant visualization and interpretation. It contains 5 parts. Part I provides a quick introduction to R and presents required R packages, as well as, data formats and dissimilarity measures for cluster analysis and visualization. Part II covers partitioning clustering methods, which subdivide the data sets into a set of k groups, where k is the number of groups pre-specified by the analyst. Partitioning clustering approaches include: K-means, K-Medoids (PAM) and CLARA algorithms. In Part III, we consider hierarchical clustering method, which is an alternative approach to partitioning clustering. The result of hierarchical clustering is a tree-based representation of the objects called dendrogram. In this part, we describe how to compute, visualize, interpret and compare dendrograms. Part IV describes clustering validation and evaluation strategies, which consists of measuring the goodness of clustering results. Among the chapters covered here, there are: Assessing clustering tendency, Determining the optimal number of clusters, Cluster validation statistics, Choosing the best clustering algorithms and Computing p-value for hierarchical clustering. Part V presents advanced clustering methods, including: Hierarchical k-means clustering, Fuzzy clustering, Model-based clustering and Density-based clustering.

A User's Guide to Principal Components

Author : J. Edward Jackson
Publisher : John Wiley & Sons
ISBN 13 : 0471725323
Total Pages : 597 pages
Book Rating : 4.4/5 (717 download)

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Book Synopsis A User's Guide to Principal Components by : J. Edward Jackson

Download or read book A User's Guide to Principal Components written by J. Edward Jackson and published by John Wiley & Sons. This book was released on 2005-01-21 with total page 597 pages. Available in PDF, EPUB and Kindle. Book excerpt: WILEY-INTERSCIENCE PAPERBACK SERIES The Wiley-Interscience Paperback Series consists of selected books that have been made more accessible to consumers in an effort to increase global appeal and general circulation. With these new unabridged softcover volumes, Wiley hopes to extend the lives of these works by making them available to future generations of statisticians, mathematicians, and scientists. From the Reviews of A User’s Guide to Principal Components "The book is aptly and correctly named–A User’s Guide. It is the kind of book that a user at any level, novice or skilled practitioner, would want to have at hand for autotutorial, for refresher, or as a general-purpose guide through the maze of modern PCA." –Technometrics "I recommend A User’s Guide to Principal Components to anyone who is running multivariate analyses, or who contemplates performing such analyses. Those who write their own software will find the book helpful in designing better programs. Those who use off-the-shelf software will find it invaluable in interpreting the results." –Mathematical Geology

Introduction to Bioinformatics with R

Author : Edward Curry
Publisher : CRC Press
ISBN 13 : 1351015303
Total Pages : 311 pages
Book Rating : 4.3/5 (51 download)

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Book Synopsis Introduction to Bioinformatics with R by : Edward Curry

Download or read book Introduction to Bioinformatics with R written by Edward Curry and published by CRC Press. This book was released on 2020-11-02 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: In biological research, the amount of data available to researchers has increased so much over recent years, it is becoming increasingly difficult to understand the current state of the art without some experience and understanding of data analytics and bioinformatics. An Introduction to Bioinformatics with R: A Practical Guide for Biologists leads the reader through the basics of computational analysis of data encountered in modern biological research. With no previous experience with statistics or programming required, readers will develop the ability to plan suitable analyses of biological datasets, and to use the R programming environment to perform these analyses. This is achieved through a series of case studies using R to answer research questions using molecular biology datasets. Broadly applicable statistical methods are explained, including linear and rank-based correlation, distance metrics and hierarchical clustering, hypothesis testing using linear regression, proportional hazards regression for survival data, and principal component analysis. These methods are then applied as appropriate throughout the case studies, illustrating how they can be used to answer research questions. Key Features: · Provides a practical course in computational data analysis suitable for students or researchers with no previous exposure to computer programming. · Describes in detail the theoretical basis for statistical analysis techniques used throughout the textbook, from basic principles · Presents walk-throughs of data analysis tasks using R and example datasets. All R commands are presented and explained in order to enable the reader to carry out these tasks themselves. · Uses outputs from a large range of molecular biology platforms including DNA methylation and genotyping microarrays; RNA-seq, genome sequencing, ChIP-seq and bisulphite sequencing; and high-throughput phenotypic screens. · Gives worked-out examples geared towards problems encountered in cancer research, which can also be applied across many areas of molecular biology and medical research. This book has been developed over years of training biological scientists and clinicians to analyse the large datasets available in their cancer research projects. It is appropriate for use as a textbook or as a practical book for biological scientists looking to gain bioinformatics skills.

Generalized Principal Component Analysis

Author : René Vidal
Publisher : Springer
ISBN 13 : 0387878114
Total Pages : 590 pages
Book Rating : 4.3/5 (878 download)

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Book Synopsis Generalized Principal Component Analysis by : René Vidal

Download or read book Generalized Principal Component Analysis written by René Vidal and published by Springer. This book was released on 2016-04-11 with total page 590 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a comprehensive introduction to the latest advances in the mathematical theory and computational tools for modeling high-dimensional data drawn from one or multiple low-dimensional subspaces (or manifolds) and potentially corrupted by noise, gross errors, or outliers. This challenging task requires the development of new algebraic, geometric, statistical, and computational methods for efficient and robust estimation and segmentation of one or multiple subspaces. The book also presents interesting real-world applications of these new methods in image processing, image and video segmentation, face recognition and clustering, and hybrid system identification etc. This book is intended to serve as a textbook for graduate students and beginning researchers in data science, machine learning, computer vision, image and signal processing, and systems theory. It contains ample illustrations, examples, and exercises and is made largely self-contained with three Appendices which survey basic concepts and principles from statistics, optimization, and algebraic-geometry used in this book. René Vidal is a Professor of Biomedical Engineering and Director of the Vision Dynamics and Learning Lab at The Johns Hopkins University. Yi Ma is Executive Dean and Professor at the School of Information Science and Technology at ShanghaiTech University. S. Shankar Sastry is Dean of the College of Engineering, Professor of Electrical Engineering and Computer Science and Professor of Bioengineering at the University of California, Berkeley.

R Graphics Essentials for Great Data Visualization

Author : Alboukadel Kassambara
Publisher : STHDA
ISBN 13 : 1979748101
Total Pages : 155 pages
Book Rating : 4.9/5 (797 download)

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Book Synopsis R Graphics Essentials for Great Data Visualization by : Alboukadel Kassambara

Download or read book R Graphics Essentials for Great Data Visualization written by Alboukadel Kassambara and published by STHDA. This book was released on 2017-11-14 with total page 155 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data visualization is one of the most important part of data science. Many books and courses present a catalogue of graphics but they don't teach you which charts to use according to the type of the data. In this book, we start by presenting the key graphic systems and packages available in R, including R base graphs, lattice and ggplot2 plotting systems. Next, we provide more than 200 practical examples to create great graphics for the right data using either the ggplot2 package and extensions or the traditional R graphics. With this book, you 'll learn: - How to quickly create beautiful graphics using ggplot2 packages - How to properly customize and annotate the plots - Type of graphics for visualizing categorical and continuous variables - How to add automatically p-values to box plots, bar plots and alternatives - How to add marginal density plots and correlation coefficients to scatter plots - Key methods for analyzing and visualizing multivariate data - R functions and packages for plotting time series data - How to combine multiple plots on one page to create production-quality figures.

Practical Guide To Chemometrics

Author : Paul Gemperline
Publisher : CRC Press
ISBN 13 : 1420018302
Total Pages : 555 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Practical Guide To Chemometrics by : Paul Gemperline

Download or read book Practical Guide To Chemometrics written by Paul Gemperline and published by CRC Press. This book was released on 2006-04-16 with total page 555 pages. Available in PDF, EPUB and Kindle. Book excerpt: The limited coverage of data analysis and statistics offered in most undergraduate and graduate analytical chemistry courses is usually focused on practical aspects of univariate methods. Drawing in real-world examples, Practical Guide to Chemometrics, Second Edition offers an accessible introduction to application-oriented multivariate meth

Statistics for Marketing and Consumer Research

Author : Mario Mazzocchi
Publisher : SAGE
ISBN 13 : 1446204014
Total Pages : 433 pages
Book Rating : 4.4/5 (462 download)

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Book Synopsis Statistics for Marketing and Consumer Research by : Mario Mazzocchi

Download or read book Statistics for Marketing and Consumer Research written by Mario Mazzocchi and published by SAGE. This book was released on 2008-05-22 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: Balancing simplicity with technical rigour, this practical guide to the statistical techniques essential to research in marketing and related fields, describes each method as well as showing how they are applied. The book is accompanied by two real data sets to replicate examples and with exercises to solve, as well as detailed guidance on the use of appropriate software including: - 750 powerpoint slides with lecture notes and step-by-step guides to run analyses in SPSS (also includes screenshots) - 136 multiple choice questions for tests This is augmented by in-depth discussion of topics including: - Sampling - Data management and statistical packages - Hypothesis testing - Cluster analysis - Structural equation modelling

The R Book

Author : Michael J. Crawley
Publisher : John Wiley & Sons
ISBN 13 : 9780470515068
Total Pages : 953 pages
Book Rating : 4.5/5 (15 download)

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Book Synopsis The R Book by : Michael J. Crawley

Download or read book The R Book written by Michael J. Crawley and published by John Wiley & Sons. This book was released on 2007-06-13 with total page 953 pages. Available in PDF, EPUB and Kindle. Book excerpt: The high-level language of R is recognized as one of the mostpowerful and flexible statistical software environments, and israpidly becoming the standard setting for quantitative analysis,statistics and graphics. R provides free access to unrivalledcoverage and cutting-edge applications, enabling the user to applynumerous statistical methods ranging from simple regression to timeseries or multivariate analysis. Building on the success of the author’s bestsellingStatistics: An Introduction using R, The R Book ispacked with worked examples, providing an all inclusive guide to R,ideal for novice and more accomplished users alike. The bookassumes no background in statistics or computing and introduces theadvantages of the R environment, detailing its applications in awide range of disciplines. Provides the first comprehensive reference manual for the Rlanguage, including practical guidance and full coverage of thegraphics facilities. Introduces all the statistical models covered by R, beginningwith simple classical tests such as chi-square and t-test. Proceeds to examine more advance methods, from regression andanalysis of variance, through to generalized linear models,generalized mixed models, time series, spatial statistics,multivariate statistics and much more. The R Book is aimed at undergraduates, postgraduates andprofessionals in science, engineering and medicine. It is alsoideal for students and professionals in statistics, economics,geography and the social sciences.

Principal Component Analysis

Author : I.T. Jolliffe
Publisher : Springer Science & Business Media
ISBN 13 : 1475719043
Total Pages : 283 pages
Book Rating : 4.4/5 (757 download)

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Book Synopsis Principal Component Analysis by : I.T. Jolliffe

Download or read book Principal Component Analysis written by I.T. Jolliffe and published by Springer Science & Business Media. This book was released on 2013-03-09 with total page 283 pages. Available in PDF, EPUB and Kindle. Book excerpt: Principal component analysis is probably the oldest and best known of the It was first introduced by Pearson (1901), techniques ofmultivariate analysis. and developed independently by Hotelling (1933). Like many multivariate methods, it was not widely used until the advent of electronic computers, but it is now weIl entrenched in virtually every statistical computer package. The central idea of principal component analysis is to reduce the dimen sionality of a data set in which there are a large number of interrelated variables, while retaining as much as possible of the variation present in the data set. This reduction is achieved by transforming to a new set of variables, the principal components, which are uncorrelated, and which are ordered so that the first few retain most of the variation present in all of the original variables. Computation of the principal components reduces to the solution of an eigenvalue-eigenvector problem for a positive-semidefinite symmetrie matrix. Thus, the definition and computation of principal components are straightforward but, as will be seen, this apparently simple technique has a wide variety of different applications, as weIl as a number of different deri vations. Any feelings that principal component analysis is a narrow subject should soon be dispelled by the present book; indeed some quite broad topics which are related to principal component analysis receive no more than a brief mention in the final two chapters.

Computational Genomics with R

Author : Altuna Akalin
Publisher : CRC Press
ISBN 13 : 1498781861
Total Pages : 463 pages
Book Rating : 4.4/5 (987 download)

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Book Synopsis Computational Genomics with R by : Altuna Akalin

Download or read book Computational Genomics with R written by Altuna Akalin and published by CRC Press. This book was released on 2020-12-16 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. The text provides accessible information and explanations, always with the genomics context in the background. This also contains practical and well-documented examples in R so readers can analyze their data by simply reusing the code presented. As the field of computational genomics is interdisciplinary, it requires different starting points for people with different backgrounds. For example, a biologist might skip sections on basic genome biology and start with R programming, whereas a computer scientist might want to start with genome biology. After reading: You will have the basics of R and be able to dive right into specialized uses of R for computational genomics such as using Bioconductor packages. You will be familiar with statistics, supervised and unsupervised learning techniques that are important in data modeling, and exploratory analysis of high-dimensional data. You will understand genomic intervals and operations on them that are used for tasks such as aligned read counting and genomic feature annotation. You will know the basics of processing and quality checking high-throughput sequencing data. You will be able to do sequence analysis, such as calculating GC content for parts of a genome or finding transcription factor binding sites. You will know about visualization techniques used in genomics, such as heatmaps, meta-gene plots, and genomic track visualization. You will be familiar with analysis of different high-throughput sequencing data sets, such as RNA-seq, ChIP-seq, and BS-seq. You will know basic techniques for integrating and interpreting multi-omics datasets. Altuna Akalin is a group leader and head of the Bioinformatics and Omics Data Science Platform at the Berlin Institute of Medical Systems Biology, Max Delbrück Center, Berlin. He has been developing computational methods for analyzing and integrating large-scale genomics data sets since 2002. He has published an extensive body of work in this area. The framework for this book grew out of the yearly computational genomics courses he has been organizing and teaching since 2015.

Practical Statistics in R for Comparing Groups

Author : Alboukadel Kassambara
Publisher :
ISBN 13 : 9781712330883
Total Pages : 206 pages
Book Rating : 4.3/5 (38 download)

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Book Synopsis Practical Statistics in R for Comparing Groups by : Alboukadel Kassambara

Download or read book Practical Statistics in R for Comparing Groups written by Alboukadel Kassambara and published by . This book was released on 2019-11-28 with total page 206 pages. Available in PDF, EPUB and Kindle. Book excerpt: This R Statistics book provides a solid step-by-step practical guide to statistical inference for comparing groups means using the R software. Additionally, we developed an R package named rstatix, which provides a simple and intuitive pipe-friendly framework, coherent with the `tidyverse` design philosophy, for computing the most common R statistical analyses, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses, outliers identification and more. This book is designed to get you doing the statistical tests in R as quick as possible. The book focuses on implementation and understanding of the methods, without having to struggle through pages of mathematical proofs. You will be guided through the steps of summarizing and visualizing the data, checking the assumptions and performing statistical tests in R, interpreting and reporting the results. The main parts of the book include: PART I. Statistical tests and assumptions for the comparison of groups means; PART II. comparing two means (t-test, Wilcoxon test, Sign test); PART III. comparing multiple means (ANOVA - Analysis of Variance for independent measures, repeated measures ANOVA, mixed ANOVA, ANCOVA and MANOVA, Kruskal-Wallis test and Friedman test).