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Author : Alan Gibbons
Publisher : Cambridge University Press
ISBN 13 : 9780521388412
Total Pages : 280 pages
Book Rating : 4.3/5 (884 download)
Download or read book Efficient Parallel Algorithms written by Alan Gibbons and published by Cambridge University Press. This book was released on 1989-11-24 with total page 280 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematics of Computing -- Parallelism.
Author : Jan van Leeuwen
Publisher : Springer Science & Business Media
ISBN 13 : 9783540584346
Total Pages : 536 pages
Book Rating : 4.5/5 (843 download)
Download or read book Algorithms - ESA '94 written by Jan van Leeuwen and published by Springer Science & Business Media. This book was released on 1994-09-14 with total page 536 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book brings together recent developments in Alzheimer's disease research with related discoveries in the field of cell biology. The book moves between basic cell biological concepts that form the underpinnings of modern Alzheimer's disease research, and current findings about proteins and cellular processes affected by the disease. Divided into three topics, the book addresses (1) protein trafficking, a problem that has become germane to the study of the amyloid precursor protein; (2) phosphorylation, a problem that underlies studies of the pathological transformation of tau to paired helical filaments; and (3) cell death, a pervasive problem in neurodegeneration.
Author : Alberto Apostolico
Publisher : Oxford University Press
ISBN 13 : 0195354346
Total Pages : 394 pages
Book Rating : 4.1/5 (953 download)
Download or read book Pattern Matching Algorithms written by Alberto Apostolico and published by Oxford University Press. This book was released on 1997-05-29 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt: Issues of matching and searching on elementary discrete structures arise pervasively in computer science and many of its applications, and their relevance is expected to grow as information is amassed and shared at an accelerating pace. Several algorithms were discovered as a result of these needs, which in turn created the subfield of Pattern Matching. This book provides an overview of the current state of Pattern Matching as seen by specialists who have devoted years of study to the field. It covers most of the basic principles and presents material advanced enough to faithfully portray the current frontier of research. Because of these recent advances, this is the right time for a book that brings together information relevant to both graduate students and specialists in need of an in-depth reference.
Author : Maxime Crochemore
Publisher : Maxime Crochemore
ISBN 13 : 0195086090
Total Pages : 396 pages
Book Rating : 4.1/5 (95 download)
Download or read book Text Algorithms written by Maxime Crochemore and published by Maxime Crochemore. This book was released on 1994 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: This much-needed book on the design of algorithms and data structures for text processing emphasizes both theoretical foundations and practical applications. It is intended to serve both as a textbook for courses on algorithm design, especially those related to text processing, and as a reference for computer science professionals. The work takes a unique approach, one that goes more deeply into its topic than other more general books. It contains both classical algorithms and recent results of research on the subject. The book is the first text to contain a collection of a wide range of text algorithms, many of them quite new and appearing here for the first time. Other algorithms, while known by reputation, have never been published in the journal literature. Two such important algorithms are those of Karp, Miller and Rosenberg, and that of Weiner. Here they are presented together for the fist time. The core of the book is the material on suffix trees and subword graphs, applications of these data structures, new approaches to time-space optimal string-matching, and text compression. Also covered are basic parallel algorithms for text problems. Applications of all these algorithms are given for problems involving data retrieval systems, treatment of natural languages, investigation of genomes, data compression software, and text processing tools. From the theoretical point of view. the book is a goldmine of paradigms for the development of efficient algorithms, providing the necessary foundation to creating practical software dealing with sequences. A crucial point in the authors' approach is the development of a methodology for presenting text algorithms so they can be fully understood. Throughout, the book emphasizes the efficiency of algorithms, holding that the essence of their usefulness depends on it. This is especially important since the algorithms described here will find application in "Big Science" areas like molecular sequence analysis where the explosive growth of data has caused problems for the current generation of software. Finally, with its development of theoretical background, the book can be considered as a mathematical foundation for the analysis and production of text processing algorithms.
Author : Sanguthevar Rajasekaran
Publisher : CRC Press
ISBN 13 : 1420011294
Total Pages : 1226 pages
Book Rating : 4.4/5 (2 download)
Download or read book Handbook of Parallel Computing written by Sanguthevar Rajasekaran and published by CRC Press. This book was released on 2007-12-20 with total page 1226 pages. Available in PDF, EPUB and Kindle. Book excerpt: The ability of parallel computing to process large data sets and handle time-consuming operations has resulted in unprecedented advances in biological and scientific computing, modeling, and simulations. Exploring these recent developments, the Handbook of Parallel Computing: Models, Algorithms, and Applications provides comprehensive coverage on a
Author : Gonzalo Navarro
Publisher : Cambridge University Press
ISBN 13 : 9780521813075
Total Pages : 236 pages
Book Rating : 4.8/5 (13 download)
Download or read book Flexible Pattern Matching in Strings written by Gonzalo Navarro and published by Cambridge University Press. This book was released on 2002-05-27 with total page 236 pages. Available in PDF, EPUB and Kindle. Book excerpt: Presents recently developed algorithms for searching for simple, multiple and extended strings, regular expressions, exact and approximate matches.
Author : Patrice Enjalbert
Publisher : Springer Science & Business Media
ISBN 13 : 9783540577850
Total Pages : 802 pages
Book Rating : 4.5/5 (778 download)
Download or read book STACS 94 written by Patrice Enjalbert and published by Springer Science & Business Media. This book was released on 1994-02-09 with total page 802 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume constitutes the proceedings of the 11th annual Symposium on Theoretical Aspects of Computer Science (STACS '94), held in Caen, France, February 24-26, 1994. Besides three prominent invited papers, the proceedings contains 60 accepted contributions chosen by the international program committee during a highly competitive reviewing process from a total of 234 submissions for 38 countries. The volume competently represents most areas of theoretical computer science with a certain emphasis on (parallel) algorithms and complexity.
Author : Christian Charras
Publisher : College PressPub Company
ISBN 13 : 9780954300647
Total Pages : 238 pages
Book Rating : 4.3/5 (6 download)
Download or read book Handbook of Exact String Matching Algorithms written by Christian Charras and published by College PressPub Company. This book was released on 2004 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: String matching is a very important subject in the wider domain of text processing. It consists of finding one, or more generally, all the occurrences of a string (more generally called a pattern) in a text. The Handbook of Exact String Matching Algorithms presents 38 methods for solving this problem. For each, it gives the main features, a description, its C code, an example and references.
Author : Christian Choffrut
Publisher : Springer Science & Business Media
ISBN 13 : 9783540522829
Total Pages : 324 pages
Book Rating : 4.5/5 (228 download)
Download or read book STACS 90 written by Christian Choffrut and published by Springer Science & Business Media. This book was released on 1990-02-07 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Symposium on Theoretical Aspects of Computer Science is organized jointly by the Special Interest Group for Applied Mathematics of AFCET (Association Française de Cybernétique Economique et Technique) and the Special Interest Group for Theoretical Computer Sciences of GI (Gesellschaft für Informatik). It is held alternately in France and in Germany. This volume contains two invited papers, on combinatorial methods in computer science, and on the complexity of local optimization, and 24 contributions on theoretical aspects of computer science. Some software systems are presented showing the possibilities of applying theoretical research to the realization of software tools.
Author : Russ Miller
Publisher : MIT Press
ISBN 13 : 9780262132336
Total Pages : 336 pages
Book Rating : 4.1/5 (323 download)
Download or read book Parallel Algorithms for Regular Architectures written by Russ Miller and published by MIT Press. This book was released on 1996 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: Parallel-Algorithms for Regular Architectures is the first book to concentrate exclusively on algorithms and paradigms for programming parallel computers such as the hypercube, mesh, pyramid, and mesh-of-trees.
Author : Juha Kärkkäinen
Publisher : Springer
ISBN 13 : 3642312659
Total Pages : 466 pages
Book Rating : 4.6/5 (423 download)
Download or read book Combinatorial Pattern Matching written by Juha Kärkkäinen and published by Springer. This book was released on 2012-06-13 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 23rd Annual Symposium on Combinatorial Pattern Matching, CPM 2012, held in Helsinki, Finland, in July 2012. The 33 revised full papers presented together with 2 invited talks were carefully reviewed and selected from 60 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees, regular expressions, graphs, point sets, and arrays. The goal is to derive non-trivial combinatorial properties of such structures and to exploit these properties in order to either achieve superior performance for the corresponding computational problems or pinpoint conditions under which searches cannot be performed efficiently. The meeting also deals with problems in computational biology, data compression and data mining, coding, information retrieval, natural language processing, and pattern recognition.
Author : Alan Gibbons
Publisher : Cambridge University Press
ISBN 13 : 9780521415569
Total Pages : 452 pages
Book Rating : 4.4/5 (155 download)
Download or read book Lectures in Parallel Computation written by Alan Gibbons and published by Cambridge University Press. This book was released on 1993-03-18 with total page 452 pages. Available in PDF, EPUB and Kindle. Book excerpt: The foundations of parallel computation, especially the efficiency of computation, are the concern of this book. Distinguished international researchers have contributed fifteen chapters which together form a coherent stream taking the reader who has little prior knowledge of the field to a position of being familiar with leading edge issues. The book may also function as a source of teaching material and reference for researchers. The first part is devoted to the Parallel Random Access Machine (P-RAM) model of parallel computation. The initial chapters justify and define the model, which is then used for the development of algorithm design in a variety of application areas such as deterministic algorithms, randomisation and algorithm resilience. The second part deals with distributed memory models of computation. The question of efficiently implementing P-RAM algorithms within these models is addressed as are the immensely interesting prospects for general purpose parallel computation.
Author : Raffaele Giancarlo
Publisher : Springer
ISBN 13 : 3540451234
Total Pages : 434 pages
Book Rating : 4.5/5 (44 download)
Download or read book Combinatorial Pattern Matching written by Raffaele Giancarlo and published by Springer. This book was released on 2003-06-29 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching, CPM 2000, held in Montreal, Canada, in June 2000.The 29 revised full papers presented together with 3 invited contributions and 2 tutorial lectures were carefully reviewed and selected from 44 submissions. The papers are devoted to current theoretical and algorithmic issues of searching and matching strings and more complicated patterns such as trees, regular expression graphs, point sets and arrays as well as to advanced applications of CPM in areas such as Internet, computational biology, multimedia systems, information retrieval, data compression, and pattern recognition.
Author : N. Ranganathan
Publisher : World Scientific
ISBN 13 : 9789810223120
Total Pages : 304 pages
Book Rating : 4.2/5 (231 download)
Download or read book VLSI & Parallel Computing for Pattern Recognition & Artificial Intelligence written by N. Ranganathan and published by World Scientific. This book was released on 1995 with total page 304 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers parallel algorithms and architectures and VLSI chips for a range of problems in image processing, computer vision, pattern recognition and artificial intelligence. The specific problems addressed include vision and image processing tasks, Fast Fourier Transforms, Hough Transforms, Discrete Cosine Transforms, image compression, polygon matching, template matching, pattern matching, fuzzy expert systems and image rotation. The collection of papers gives the reader a good introduction to the state-of-the-art, while for an expert this serves as a good reference and a source of some new contributions in this field.
Author : Christina Boucher
Publisher : Springer Nature
ISBN 13 : 303059212X
Total Pages : 309 pages
Book Rating : 4.0/5 (35 download)
Download or read book String Processing and Information Retrieval written by Christina Boucher and published by Springer Nature. This book was released on 2020-09-16 with total page 309 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 27th International Symposium on String Processing and Information Retrieval, SPIRE 2020, held in Orlando, FL, USA, in October 2020. The 17 full papers and 4 short papers presented in this volume were carefully reviewed and selected from 32 submissions. They cover topics such as: data structures; algorithms; information retrieval; compression; combinatorics on words; and computational biology.
Author : Renato Capocelli
Publisher : Springer Science & Business Media
ISBN 13 : 146139323X
Total Pages : 485 pages
Book Rating : 4.4/5 (613 download)
Download or read book Sequences II written by Renato Capocelli and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 485 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains all papers presented at the workshop "Sequences '91: Methods in Communication, Security and Computer Science," which was held Monday, June 17, through Friday, June 21, 1991, at the Hotel Covo dei Saraceni, Positano, ltaly. The event was sponsored by the Dipartimento di Informatica ed Applicazioni of the University of Salerno and by the Dipartimento di Matematica of the University of Rome. We wish to express our warmest thanks to the members of the program Committee: Professor B. Bose, Professor S. Even, Professor Z. Galil, Professor A. Lempel, Professor J. Massey, Professor D. Perrin, and Professor J. Storer. Furthermore, Professor Luisa Gargano provided effective, ceaseless help both during the organization of the workshop and during the preparation of this vol ume. Finally, we would like to express our sincere gratitude to all participants of the Workshop. R. M. C. A. D. S. U. V. Salerno, December 1991 Contents Preface. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vll Contributors. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Xill Communication On the Enumeration of Dyadic Distributions I. F. Blake, GH. Freeman, and P. R. Stubley . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 Detection of Skew in a Sequence of Subsets M. Blaum and J. Bruck . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 Asymmetric Error Correcting Codes B. Bose and S. Cunningham . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24 Binary Perfect Weighted Coverings (PWC) GoO. Cohen, S. N. Litsyn, and H. F. Mattson, Jr. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 36 Read/Write Isolated Memory M. Cohn . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52 Polynomial-Time Construction of Linear Codes with Almost Equal Weights G. Lachaud and J. Stern . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 59 Welch's Bound and Sequence Sets for Code-Division Multiple-Access Systems J. L. Massey and T. Mittelholzer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ."
Author : Ken Nguyen
Publisher : John Wiley & Sons
ISBN 13 : 1119272459
Total Pages : 244 pages
Book Rating : 4.1/5 (192 download)
Download or read book Multiple Biological Sequence Alignment written by Ken Nguyen and published by John Wiley & Sons. This book was released on 2016-06-10 with total page 244 pages. Available in PDF, EPUB and Kindle. Book excerpt: Covers the fundamentals and techniques of multiple biological sequence alignment and analysis, and shows readers how to choose the appropriate sequence analysis tools for their tasks This book describes the traditional and modern approaches in biological sequence alignment and homology search. This book contains 11 chapters, with Chapter 1 providing basic information on biological sequences. Next, Chapter 2 contains fundamentals in pair-wise sequence alignment, while Chapters 3 and 4 examine popular existing quantitative models and practical clustering techniques that have been used in multiple sequence alignment. Chapter 5 describes, characterizes and relates many multiple sequence alignment models. Chapter 6 describes how traditionally phylogenetic trees have been constructed, and available sequence knowledge bases can be used to improve the accuracy of reconstructing phylogeny trees. Chapter 7 covers the latest methods developed to improve the run-time efficiency of multiple sequence alignment. Next, Chapter 8 covers several popular existing multiple sequence alignment server and services, and Chapter 9 examines several multiple sequence alignment techniques that have been developed to handle short sequences (reads) produced by the Next Generation Sequencing technique (NSG). Chapter 10 describes a Bioinformatics application using multiple sequence alignment of short reads or whole genomes as input. Lastly, Chapter 11 provides a review of RNA and protein secondary structure prediction using the evolution information inferred from multiple sequence alignments. • Covers the full spectrum of the field, from alignment algorithms to scoring methods, practical techniques, and alignment tools and their evaluations • Describes theories and developments of scoring functions and scoring matrices •Examines phylogeny estimation and large-scale homology search Multiple Biological Sequence Alignment: Scoring Functions, Algorithms and Applications is a reference for researchers, engineers, graduate and post-graduate students in bioinformatics, and system biology and molecular biologists. Ken Nguyen, PhD, is an associate professor at Clayton State University, GA, USA. He received his PhD, MSc and BSc degrees in computer science all from Georgia State University. His research interests are in databases, parallel and distribute computing and bioinformatics. He was a Molecular Basis of Disease fellow at Georgia State and is the recipient of the highest graduate honor at Georgia State, the William M. Suttles Graduate Fellowship. Xuan Guo, PhD, is a postdoctoral associate at Oak Ridge National Lab, USA. He received his PhD degree in computer science from Georgia State University in 2015. His research interests are in bioinformatics, machine leaning, and cloud computing. He is an editorial assistant of International Journal of Bioinformatics Research and Applications. Yi Pan, PhD, is a Regents' Professor of Computer Science and an Interim Associate Dean and Chair of Biology at Georgia State University. He received his BE and ME in computer engineering from Tsinghua University in China and his PhD in computer science from the University of Pittsburgh. Dr. Pan's research interests include parallel and distributed computing, optical networks, wireless networks and bioinformatics. He has published more than 180 journal papers with about 60 papers published in various IEEE/ACM journals. He is co-editor along with Albert Y. Zomaya of the Wiley Series in Bioinformatics.
