Omics And Its Integration A Systems Biology Approach To Understanding Plant Physiology

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Omics and its Integration: A Systems Biology Approach to Understanding Plant Physiology

Author : Kashif Ali
Publisher : Frontiers Media SA
ISBN 13 : 2832539785
Total Pages : 155 pages
Book Rating : 4.8/5 (325 download)

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Book Synopsis Omics and its Integration: A Systems Biology Approach to Understanding Plant Physiology by : Kashif Ali

Download or read book Omics and its Integration: A Systems Biology Approach to Understanding Plant Physiology written by Kashif Ali and published by Frontiers Media SA. This book was released on 2023-11-27 with total page 155 pages. Available in PDF, EPUB and Kindle. Book excerpt: Due to the complexity and interconnectivity of many biological processes, an integrative systems biology approach is required to better understand them. The integration of various omics data (including genomics, proteomics, transcriptomics, and metabolomics data) will provide a holistic view that highlights the relationship among the various biomolecules and their functions in plant growth, resistance, quality, and many other important traits. Recent advances in analytical power and in the ability to process large data sets has enabled researchers to integrate multi-omics data and have a much deeper knowledge of the cell, tissue, organ, or even an entire organism being studied. The goal of this Research Topic is not only to publish high-quality and reliable omics data but also to answer the bigger question of how to integrate and correlate different data sets from multiple omics studies. Can one omics data set be used as a primary data set for the design and execution of another omics study? If so, then how it can be done? What are its pre-requisites? How can we plan research involving multi-omics approach to reach a meaningful conclusion? These are the questions that need our attention and their answers are critical for the future of omics-based research. For this Research Topic, we welcome contributors to submit manuscripts related to the following themes: • Studies on plant-based genomics, transcriptomics, proteomics, and metabolomics; • Development of new analytical methods for omics utilizing in plants; • Advancements in the current analytical methods for utilizing omics in plants; • Integration of multi-omics data sets; • Development of new statistical methods for data analysis.

Advances in Plant Omics and Systems Biology Approaches

Author : Flavia Vischi Winck
Publisher :
ISBN 13 : 9783030803544
Total Pages : 0 pages
Book Rating : 4.8/5 (35 download)

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Book Synopsis Advances in Plant Omics and Systems Biology Approaches by : Flavia Vischi Winck

Download or read book Advances in Plant Omics and Systems Biology Approaches written by Flavia Vischi Winck and published by . This book was released on 2021 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the post-genomic era, several plant species have been sequenced and massive genomic information is now available which contributed to expand the development of novel technical strategies for the study of additional levels of biological information of plant species. This book focuses on the "omics" approaches together with systems analysis of several different plant species, which have revealed very interesting variations on the cellular responses at the protein, transcript and metabolite levels in response to changes environmental conditions. The volume covers recent technological advances in the area of "omics" and synthesizes recent findings of the field of plant "omics" and systems biology together along with techniques that can be applied for such studies.

Integrative Omics

Author : Manish Kumar Gupta
Publisher : Elsevier
ISBN 13 : 0443160937
Total Pages : 434 pages
Book Rating : 4.4/5 (431 download)

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Book Synopsis Integrative Omics by : Manish Kumar Gupta

Download or read book Integrative Omics written by Manish Kumar Gupta and published by Elsevier. This book was released on 2024-05-10 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: Integrative Omics: Concepts, Methodology and Applications provides a holistic and integrated view of defining and applying network approaches, integrative tools, and methods to solve problems for the rationalization of genotype to phenotype relationships. The reference includes a range of chapters in a systemic ‘step by step’ manner, which begins with the basic concepts from Omic to Multi Integrative Omics approaches, followed by their full range of approaches, applications, emerging trends, and future trends. All key areas of Omics are covered including biological databases, sequence alignment, pharmacogenomics, nutrigenomics and microbial omics, integrated omics for Food Science and Identification of genes associated with disease, clinical data integration and data warehousing, translational omics as well as omics technology policy and society research. Integrative Omics: Concepts, Methodology and Applications highlights the recent concepts, methodologies, advancements in technologies and is also well-suited for researchers from both academic and industry background, undergraduate and graduate students who are mainly working in the area of computational systems biology, integrative omics and translational science. The book bridges the gap between biological sciences, physical sciences, computer science, statistics, data science, information technology and mathematics by presenting content specifically dedicated to mathematical models of biological systems. Provides a holistic, integrated view of a defining and applying network approach, integrative tools, and methods to solve problems for rationalization of genotype to phenotype relationships Offers an interdisciplinary approach to Databases, data analytics techniques, biological tools, network construction, analysis, modeling, prediction and simulation of biological systems leading to ‘translational research’, i.e., drug discovery, drug target prediction, and precision medicine Covers worldwide methods, concepts, databases, and tools used in the construction of integrated pathways

Omics Technologies Toward Systems Biology

Author : Fatemeh Maghuly
Publisher : Frontiers Media SA
ISBN 13 : 288971568X
Total Pages : 218 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis Omics Technologies Toward Systems Biology by : Fatemeh Maghuly

Download or read book Omics Technologies Toward Systems Biology written by Fatemeh Maghuly and published by Frontiers Media SA. This book was released on 2022-01-24 with total page 218 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Omics in Plant Breeding

Author : Aluízio Borém
Publisher : John Wiley & Sons
ISBN 13 : 1118820843
Total Pages : 253 pages
Book Rating : 4.1/5 (188 download)

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Book Synopsis Omics in Plant Breeding by : Aluízio Borém

Download or read book Omics in Plant Breeding written by Aluízio Borém and published by John Wiley & Sons. This book was released on 2014-06-03 with total page 253 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational and high-throughput methods, such as genomics, proteomics, and transcriptomics, known collectively as “-omics,” have been used to study plant biology for well over a decade now. As these technologies mature, plant and crop scientists have started using these methods to improve crop varieties. Omics in Plant Breeding provides a timely introduction to key omicsbased methods and their application in plant breeding. Omics in Plant Breeding is a practical and accessible overview of specific omics-based methods ranging from metabolomics to phenomics. Covering a single methodology within each chapter, this book provides thorough coverage that ensures a strong understanding of each methodology both in its application to, and improvement of, plant breeding. Accessible to advanced students, researchers, and professionals, Omics in Plant Breeding will be an essential entry point into this innovative and exciting field. • A valuable overview of high-throughput, genomics-based technologies and their applications to plant breeding • Each chapter explores a single methodology, allowing for detailed and thorough coverage • Coverage ranges from well-established methodologies, such as genomics and proteomics, to emerging technologies, including phenomics and physionomics Aluízio Borém is a Professor of Plant Breeding at the University of Viçosa in Brazil. Roberto Fritsche-Neto is a Professor of Genetics and Plant Breeding at the University of São Paulo in Brazil.

Plant Systems Biology

Author : Sacha Baginsky
Publisher : Springer Science & Business Media
ISBN 13 : 3764372613
Total Pages : 362 pages
Book Rating : 4.7/5 (643 download)

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Book Synopsis Plant Systems Biology by : Sacha Baginsky

Download or read book Plant Systems Biology written by Sacha Baginsky and published by Springer Science & Business Media. This book was released on 2007-02-16 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume aims to provide a timely view of the state-of-the-art in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.

Plant Stress Tolerance

Author : Kareem A. Mosa
Publisher : Springer
ISBN 13 : 331959379X
Total Pages : 73 pages
Book Rating : 4.3/5 (195 download)

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Book Synopsis Plant Stress Tolerance by : Kareem A. Mosa

Download or read book Plant Stress Tolerance written by Kareem A. Mosa and published by Springer. This book was released on 2017-06-24 with total page 73 pages. Available in PDF, EPUB and Kindle. Book excerpt: Providing a comprehensive overview of cutting-edge research on Omics applications in plant sciences field,“Plant Stress Tolerance” focuses on different approaches towards plant stress tolerance including both biotic stresses and abiotic stresses. This book outlines the challenges facing this area of research, with solid, up-to-date information for graduate students, academic scientists and researchers on using the recent advances of Omics technologies on plant stresses.

Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield

Author : Ganesh K. Agrawal
Publisher : Springer Science & Business Media
ISBN 13 : 9400747497
Total Pages : 592 pages
Book Rating : 4.4/5 (7 download)

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Book Synopsis Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield by : Ganesh K. Agrawal

Download or read book Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield written by Ganesh K. Agrawal and published by Springer Science & Business Media. This book was released on 2012-12-09 with total page 592 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book is about the seed development in the model and crop plants. Seed development is a key step of the plant life cycle that determines the nutrient value of seeds – the life for human civilization, growth, and development. The nutrient value of seeds is mainly due to storage reserve products such as carbohydrates, lipids (triacylglycerols), and proteins. The book primarily focuses on application of the 21st century high-throughput technologies transcriptomics, proteomics, metabolomics, and systems biology in near complete understanding of the various processes involved in seed development in different crop plants. The book reveals how such technologies have revolutionized our understanding of the multilayer processes and regulations involved therein by generating large-scale datasets. Accumulated datasets provide basic knowledge to develop integrated strategies to eventually improve the nutritional value of plant seed and crop yield, a critical goal in food security issues around the globe.

Genomics of Plant–Pathogen Interaction and the Stress Response

Author : Ashutosh Mani
Publisher : CRC Press
ISBN 13 : 1000952452
Total Pages : 217 pages
Book Rating : 4.0/5 (9 download)

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Book Synopsis Genomics of Plant–Pathogen Interaction and the Stress Response by : Ashutosh Mani

Download or read book Genomics of Plant–Pathogen Interaction and the Stress Response written by Ashutosh Mani and published by CRC Press. This book was released on 2023-09-25 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants are an indispensable part of human and animal lives for nutrition and health. But pests, diseases and abiotic stress adversely affect crop yield, which ultimately places significant pressure on society to provide food to an increasing population. Moreover, it also encourages increased chemical/pesticide usage on crops, which we see in the biomagnification of toxic and hazardous compounds polluting water bodies, soil and the environment. This condition will continue to worsen in the future due to the resistance-acquiring ability of pathogens against plant defense and chemical treatments. In addition, environmental disturbances and consumer health issues are being reported more promptly than before due to intensive use of pesticides in food production. Plant diseases affect our daily lives, as the use of insecticides and pesticides has become part of our food chain. As a result, precise disease diagnosis and management is crucial in order to avoid huge losses in plant production and related commodities. Accurate detection, precise diagnosis and proper management can play a significant role in keeping plants free from pathogens. In this book, scientists, researchers and scholars share their research knowledge, offering a valuable resource for understanding plant diseases, pathogen interaction and responses to stress through an omics perspective, contributing to further advancements in the field Diseases in plants may be caused by various factors, such as viruses, bacteria, fungi and abiotic stress. Disease causes low crop yield, production of poor-quality fruits and grains, and deficiency of nutrients, which have a direct impact on human and animal health. A genomics-based approach can be applied to disease diagnosis; disease outbreak; evolution of plant and pathogen genome for disease outbreak in relation to climate change; and development of long-term strategies for plant health and defense. This book presents an overview of omics technologies and approaches used to understand: 1) the relation between plants and their environment in terms of diseases 2) responses to abiotic stress 3) the genomics of plant–pathogen interaction 4) herbicide-resistance mechanisms 5) the epigenetics of plant–pathogen interaction 6) gene regulation during abiotic stress response 7) the oxidative stress response

Annual Plant Reviews, Plant Systems Biology

Author : Gloria Coruzzi
Publisher : John Wiley & Sons
ISBN 13 : 9781444312232
Total Pages : 376 pages
Book Rating : 4.3/5 (122 download)

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Book Synopsis Annual Plant Reviews, Plant Systems Biology by : Gloria Coruzzi

Download or read book Annual Plant Reviews, Plant Systems Biology written by Gloria Coruzzi and published by John Wiley & Sons. This book was released on 2009-05-06 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant Systems Biology is an excellent new addition to theincreasingly well-known and respected Annual Plant Reviews.Split into two parts, this title offers the reader: A fundamental conceptual framework for Systems Biologyincluding Network Theory The progress achieved for diverse model organisms: Prokaryotes, C. elegans and Arabidopsis The diverse sources of “omic” information necessaryfor a systems understanding of plants Insights into the software tools developed for systemsbiology Interesting case studies regarding applications includingnitrogen-use, flowering-time and root development Ecological and evolutionary considerations regarding livingsystems This volume captures the cutting edge of systems biologyresearch and aims to be an introductory material for undergraduateand graduate students as well as plant and agricultural scientists,molecular biologists, geneticists and microbiologists. It alsoserves as a foundation in the biological aspects of the field forinterested computer scientists. Libraries in all universities andresearch establishments where biological and agricultural sciencesare studied and taught and integrated with Computer Sciences shouldhave copies of this important volume on their shelves.

Omics Technologies and Crop Improvement

Author : Noureddine Benkeblia
Publisher : CRC Press
ISBN 13 : 1466586680
Total Pages : 396 pages
Book Rating : 4.4/5 (665 download)

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Book Synopsis Omics Technologies and Crop Improvement by : Noureddine Benkeblia

Download or read book Omics Technologies and Crop Improvement written by Noureddine Benkeblia and published by CRC Press. This book was released on 2014-10-14 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: Increased world population, decreased water supply, and climate change all put stresses on the global food supply. An exploration of the challenges and possible solutions to improve yields of the main crops, such as cereals, roots, tubers, and grasses, Omics Technologies and Crop Improvement reviews data on food sciences and omics. The book covers modern omic technologies such as nutrigenomics and metagenomics. It provides a detailed examination of how omics can help crop science and horticulture and introduces the benefits of using these technologies to increase crop yields and other features such as resistance and nutritional values. The book highlights crop improvements such as increased yield, drought resistance, disease resistance, and value-added performance through a non-transgenic format. It explores how the different omics technologies, especially the most recent ones (proteomics, metabolomics, nutrigenomics, ionomics, and metagenomics) would be used to improve the quantitative and qualitative features of crop plants. Topics covered include: Advances in omics for improved fresh crops Transcriptome analyses on the drought response using drought tolerant near isogenic lines Metabolite profiling that reveals different effects of nitrogen amendments on vegetables Omics technology application to forage crops improvement Secondary metabolites and plant tissue culture RNAi technology and crop improvement Gene expression analysis methods with NGS data Web database resources and crops improvement Gene Expression Networks (GEN) in crops Specific crop improvement (papaya, wheat, coffee, potato, and more) With contributions from pioneering researchers from twelve countries, the book presents a broad view of how omics would help crop science and horticulture meet the challenges of a shrinking global food supply for a burgeoning global population.

Abiotic Stress Response in Plants

Author : Narendra Tuteja
Publisher : John Wiley & Sons
ISBN 13 : 3527694587
Total Pages : 456 pages
Book Rating : 4.5/5 (276 download)

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Book Synopsis Abiotic Stress Response in Plants by : Narendra Tuteja

Download or read book Abiotic Stress Response in Plants written by Narendra Tuteja and published by John Wiley & Sons. This book was released on 2016-01-08 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: Understanding abiotic stress responses in plants is critical for the development of new varieties of crops, which are better adapted to harsh climate conditions. The new book by the well-known editor team Narendra Tuteja and Sarvajeet Gill provides a comprehensive overview on the molecular basis of plant responses to external stress like drought or heavy metals, to aid in the engineering of stress resistant crops. After a general introduction into the topic, the following sections deal with specific signaling pathways mediating plant stress response. The last part covers translational plant physiology, describing several examples of the development of more stress-resistant crop varieties.

Genomics of Plant–Pathogen Interaction and the Stress Response

Author : Ashutosh Mani
Publisher : CRC Press
ISBN 13 : 1000952436
Total Pages : 220 pages
Book Rating : 4.0/5 (9 download)

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Book Synopsis Genomics of Plant–Pathogen Interaction and the Stress Response by : Ashutosh Mani

Download or read book Genomics of Plant–Pathogen Interaction and the Stress Response written by Ashutosh Mani and published by CRC Press. This book was released on 2023-09-25 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants are an indispensable part of human and animal lives for nutrition and health. But pests, diseases and abiotic stress adversely affect crop yield, which ultimately places significant pressure on society to provide food to an increasing population. Moreover, it also encourages increased chemical/pesticide usage on crops, which we see in the biomagnification of toxic and hazardous compounds polluting water bodies, soil and the environment. This condition will continue to worsen in the future due to the resistance-acquiring ability of pathogens against plant defense and chemical treatments. In addition, environmental disturbances and consumer health issues are being reported more promptly than before due to intensive use of pesticides in food production. Plant diseases affect our daily lives, as the use of insecticides and pesticides has become part of our food chain. As a result, precise disease diagnosis and management is crucial in order to avoid huge losses in plant production and related commodities. Accurate detection, precise diagnosis and proper management can play a significant role in keeping plants free from pathogens. In this book, scientists, researchers and scholars share their research knowledge, offering a valuable resource for understanding plant diseases, pathogen interaction and responses to stress through an omics perspective, contributing to further advancements in the field Diseases in plants may be caused by various factors, such as viruses, bacteria, fungi and abiotic stress. Disease causes low crop yield, production of poor-quality fruits and grains, and deficiency of nutrients, which have a direct impact on human and animal health. A genomics-based approach can be applied to disease diagnosis; disease outbreak; evolution of plant and pathogen genome for disease outbreak in relation to climate change; and development of long-term strategies for plant health and defense. This book presents an overview of omics technologies and approaches used to understand: the relation between plants and their environment in terms of diseases responses to abiotic stress the genomics of plant–pathogen interaction herbicide-resistance mechanisms the epigenetics of plant–pathogen interaction gene regulation during abiotic stress response the oxidative stress response

Integration of OMICS Data to Understand Plant Metabolism

Author : Carlos Alberto Labate
Publisher : Frontiers Media SA
ISBN 13 : 2889459101
Total Pages : 153 pages
Book Rating : 4.8/5 (894 download)

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Book Synopsis Integration of OMICS Data to Understand Plant Metabolism by : Carlos Alberto Labate

Download or read book Integration of OMICS Data to Understand Plant Metabolism written by Carlos Alberto Labate and published by Frontiers Media SA. This book was released on 2019-07-10 with total page 153 pages. Available in PDF, EPUB and Kindle. Book excerpt:

PlantOmics: The Omics of Plant Science

Author : Debmalya Barh
Publisher : Springer
ISBN 13 : 8132221729
Total Pages : 825 pages
Book Rating : 4.1/5 (322 download)

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Book Synopsis PlantOmics: The Omics of Plant Science by : Debmalya Barh

Download or read book PlantOmics: The Omics of Plant Science written by Debmalya Barh and published by Springer. This book was released on 2015-03-18 with total page 825 pages. Available in PDF, EPUB and Kindle. Book excerpt: PlantOmics: The Omics of Plant Science provides a comprehensive account of the latest trends and developments of omics technologies or approaches and their applications in plant science. Thirty chapters written by 90 experts from 15 countries are included in this state-of-the-art book. Each chapter describes one topic/omics such as: omics in model plants, spectroscopy for plants, next generation sequencing, functional genomics, cyto-metagenomics, epigenomics, miRNAomics, proteomics, metabolomics, glycomics, lipidomics, secretomics, phenomics, cytomics, physiomics, signalomics, thiolomics, organelle omics, micro morphomics, microbiomics, cryobionomics, nanotechnology, pharmacogenomics, and computational systems biology for plants. It provides up to date information, technologies, and their applications that can be adopted and applied easily for deeper understanding plant biology and therefore will be helpful in developing the strategy for generating cost-effective superior plants for various purposes. In the last chapter, the editors have proposed several new areas in plant omics that may be explored in order to develop an integrated meta-omics strategy to ensure the world and earth’s health and related issues. This book will be a valuable resource to students and researchers in the field of cutting-edge plant omics.

Plant Omics: Trends and Applications

Author : Khalid Rehman Hakeem
Publisher : Springer
ISBN 13 : 9783319811000
Total Pages : 514 pages
Book Rating : 4.8/5 (11 download)

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Book Synopsis Plant Omics: Trends and Applications by : Khalid Rehman Hakeem

Download or read book Plant Omics: Trends and Applications written by Khalid Rehman Hakeem and published by Springer. This book was released on 2018-06-11 with total page 514 pages. Available in PDF, EPUB and Kindle. Book excerpt: To comprehend the organizational principle of cellular functions at diff erent levels, an integrative approach with large-scale experiments, the so-called ‘omics’ data including genomics, transcriptomics, proteomics, and metabolomics, is needed. Omics aims at the collective characterization and quantifi cation of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms. Currently, omics is an essential tool to understand the molecular systems that underlie various plant functions. Furthermore, in several plant species, the development of omicsresources has progressed to address the particular biological properties of individual species. Integration of knowledge from omics-based research is an emerging issue as researchers seek to identify significance, gain biological insights and promote translational research. From these perspectives, we intend to provide the emerging aspects of plant systems research based on omics and bioinformatics analyses together with their associated resources and technological advances. Th e present book covers a wide range of omics topics, and discusses the latest trends and application area of plant sciences. In this volume, we have highlighted the working solutions as well as open problems and future challenges in plant omics studies. We believe that this book will initiate and introduce readers to state-of-the-art developments and trends in omics-driven research.

Salt Stress in Plants

Author : Parvaiz Ahmad
Publisher : Springer Science & Business Media
ISBN 13 : 1461461081
Total Pages : 518 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Salt Stress in Plants by : Parvaiz Ahmad

Download or read book Salt Stress in Plants written by Parvaiz Ahmad and published by Springer Science & Business Media. This book was released on 2013-02-26 with total page 518 pages. Available in PDF, EPUB and Kindle. Book excerpt: Environmental conditions and changes, irrespective of source, cause a variety of stresses, one of the most prevalent of which is salt stress. Excess amount of salt in the soil adversely affects plant growth and development, and impairs production. Nearly 20% of the world’s cultivated area and nearly half of the world’s irrigated lands are affected by salinity. Processes such as seed germination, seedling growth and vigour, vegetative growth, flowering and fruit set are adversely affected by high salt concentration, ultimately causing diminished economic yield and also quality of produce. Most plants cannot tolerate salt-stress. High salt concentrations decrease the osmotic potential of soil solution, creating a water stress in plants and severe ion toxicity. The interactions of salts with mineral nutrition may result in nutrient imbalances and deficiencies. The consequence of all these can ultimately lead to plant death as a result of growth arrest and molecular damage. To achieve salt-tolerance, the foremost task is either to prevent or alleviate the damage, or to re-establish homeostatic conditions in the new stressful environment. Barring a few exceptions, the conventional breeding techniques have been unsuccessful in transferring the salt-tolerance trait to the target species. A host of genes encoding different structural and regulatory proteins have been used over the past 5–6 years for the development of a range of abiotic stress-tolerant plants. It has been shown that using regulatory genes is a more effective approach for developing stress-tolerant plants. Thus, understanding the molecular basis will be helpful in developing selection strategies for improving salinity tolerance. This book will shed light on the effect of salt stress on plants development, proteomics, genomics, genetic engineering, and plant adaptations, among other topics. The book will cover around 25 chapters with contributors from all over the world.