Monte Carlo Methods in Bayesian Computation

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Publisher : Springer Science & Business Media
ISBN 13 : 1461212766
Total Pages : 399 pages
Book Rating : 4.4/5 (612 download)

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Book Synopsis Monte Carlo Methods in Bayesian Computation by : Ming-Hui Chen

Download or read book Monte Carlo Methods in Bayesian Computation written by Ming-Hui Chen and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 399 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dealing with methods for sampling from posterior distributions and how to compute posterior quantities of interest using Markov chain Monte Carlo (MCMC) samples, this book addresses such topics as improving simulation accuracy, marginal posterior density estimation, estimation of normalizing constants, constrained parameter problems, highest posterior density interval calculations, computation of posterior modes, and posterior computations for proportional hazards models and Dirichlet process models. The authors also discuss model comparisons, including both nested and non-nested models, marginal likelihood methods, ratios of normalizing constants, Bayes factors, the Savage-Dickey density ratio, Stochastic Search Variable Selection, Bayesian Model Averaging, the reverse jump algorithm, and model adequacy using predictive and latent residual approaches. The book presents an equal mixture of theory and applications involving real data, and is intended as a graduate textbook or a reference book for a one-semester course at the advanced masters or Ph.D. level. It will also serve as a useful reference for applied or theoretical researchers as well as practitioners.

Accelerating Monte Carlo methods for Bayesian inference in dynamical models

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Publisher : Linköping University Electronic Press
ISBN 13 : 9176857972
Total Pages : 139 pages
Book Rating : 4.1/5 (768 download)

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Book Synopsis Accelerating Monte Carlo methods for Bayesian inference in dynamical models by : Johan Dahlin

Download or read book Accelerating Monte Carlo methods for Bayesian inference in dynamical models written by Johan Dahlin and published by Linköping University Electronic Press. This book was released on 2016-03-22 with total page 139 pages. Available in PDF, EPUB and Kindle. Book excerpt: Making decisions and predictions from noisy observations are two important and challenging problems in many areas of society. Some examples of applications are recommendation systems for online shopping and streaming services, connecting genes with certain diseases and modelling climate change. In this thesis, we make use of Bayesian statistics to construct probabilistic models given prior information and historical data, which can be used for decision support and predictions. The main obstacle with this approach is that it often results in mathematical problems lacking analytical solutions. To cope with this, we make use of statistical simulation algorithms known as Monte Carlo methods to approximate the intractable solution. These methods enjoy well-understood statistical properties but are often computational prohibitive to employ. The main contribution of this thesis is the exploration of different strategies for accelerating inference methods based on sequential Monte Carlo (SMC) and Markov chain Monte Carlo (MCMC). That is, strategies for reducing the computational effort while keeping or improving the accuracy. A major part of the thesis is devoted to proposing such strategies for the MCMC method known as the particle Metropolis-Hastings (PMH) algorithm. We investigate two strategies: (i) introducing estimates of the gradient and Hessian of the target to better tailor the algorithm to the problem and (ii) introducing a positive correlation between the point-wise estimates of the target. Furthermore, we propose an algorithm based on the combination of SMC and Gaussian process optimisation, which can provide reasonable estimates of the posterior but with a significant decrease in computational effort compared with PMH. Moreover, we explore the use of sparseness priors for approximate inference in over-parametrised mixed effects models and autoregressive processes. This can potentially be a practical strategy for inference in the big data era. Finally, we propose a general method for increasing the accuracy of the parameter estimates in non-linear state space models by applying a designed input signal. Borde Riksbanken höja eller sänka reporäntan vid sitt nästa möte för att nå inflationsmålet? Vilka gener är förknippade med en viss sjukdom? Hur kan Netflix och Spotify veta vilka filmer och vilken musik som jag vill lyssna på härnäst? Dessa tre problem är exempel på frågor där statistiska modeller kan vara användbara för att ge hjälp och underlag för beslut. Statistiska modeller kombinerar teoretisk kunskap om exempelvis det svenska ekonomiska systemet med historisk data för att ge prognoser av framtida skeenden. Dessa prognoser kan sedan användas för att utvärdera exempelvis vad som skulle hända med inflationen i Sverige om arbetslösheten sjunker eller hur värdet på mitt pensionssparande förändras när Stockholmsbörsen rasar. Tillämpningar som dessa och många andra gör statistiska modeller viktiga för många delar av samhället. Ett sätt att ta fram statistiska modeller bygger på att kontinuerligt uppdatera en modell allteftersom mer information samlas in. Detta angreppssätt kallas för Bayesiansk statistik och är särskilt användbart när man sedan tidigare har bra insikter i modellen eller tillgång till endast lite historisk data för att bygga modellen. En nackdel med Bayesiansk statistik är att de beräkningar som krävs för att uppdatera modellen med den nya informationen ofta är mycket komplicerade. I sådana situationer kan man istället simulera utfallet från miljontals varianter av modellen och sedan jämföra dessa mot de historiska observationerna som finns till hands. Man kan sedan medelvärdesbilda över de varianter som gav bäst resultat för att på så sätt ta fram en slutlig modell. Det kan därför ibland ta dagar eller veckor för att ta fram en modell. Problemet blir särskilt stort när man använder mer avancerade modeller som skulle kunna ge bättre prognoser men som tar för lång tid för att bygga. I denna avhandling använder vi ett antal olika strategier för att underlätta eller förbättra dessa simuleringar. Vi föreslår exempelvis att ta hänsyn till fler insikter om systemet och därmed minska antalet varianter av modellen som behöver undersökas. Vi kan således redan utesluta vissa modeller eftersom vi har en bra uppfattning om ungefär hur en bra modell ska se ut. Vi kan också förändra simuleringen så att den enklare rör sig mellan olika typer av modeller. På detta sätt utforskas rymden av alla möjliga modeller på ett mer effektivt sätt. Vi föreslår ett antal olika kombinationer och förändringar av befintliga metoder för att snabba upp anpassningen av modellen till observationerna. Vi visar att beräkningstiden i vissa fall kan minska ifrån några dagar till någon timme. Förhoppningsvis kommer detta i framtiden leda till att man i praktiken kan använda mer avancerade modeller som i sin tur resulterar i bättre prognoser och beslut.

Markov Chain Monte Carlo

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Publisher : CRC Press
ISBN 13 : 9781584885870
Total Pages : 352 pages
Book Rating : 4.8/5 (858 download)

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Book Synopsis Markov Chain Monte Carlo by : Dani Gamerman

Download or read book Markov Chain Monte Carlo written by Dani Gamerman and published by CRC Press. This book was released on 2006-05-10 with total page 352 pages. Available in PDF, EPUB and Kindle. Book excerpt: While there have been few theoretical contributions on the Markov Chain Monte Carlo (MCMC) methods in the past decade, current understanding and application of MCMC to the solution of inference problems has increased by leaps and bounds. Incorporating changes in theory and highlighting new applications, Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference, Second Edition presents a concise, accessible, and comprehensive introduction to the methods of this valuable simulation technique. The second edition includes access to an internet site that provides the code, written in R and WinBUGS, used in many of the previously existing and new examples and exercises. More importantly, the self-explanatory nature of the codes will enable modification of the inputs to the codes and variation on many directions will be available for further exploration. Major changes from the previous edition: · More examples with discussion of computational details in chapters on Gibbs sampling and Metropolis-Hastings algorithms · Recent developments in MCMC, including reversible jump, slice sampling, bridge sampling, path sampling, multiple-try, and delayed rejection · Discussion of computation using both R and WinBUGS · Additional exercises and selected solutions within the text, with all data sets and software available for download from the Web · Sections on spatial models and model adequacy The self-contained text units make MCMC accessible to scientists in other disciplines as well as statisticians. The book will appeal to everyone working with MCMC techniques, especially research and graduate statisticians and biostatisticians, and scientists handling data and formulating models. The book has been substantially reinforced as a first reading of material on MCMC and, consequently, as a textbook for modern Bayesian computation and Bayesian inference courses.

Markov Chain Monte Carlo

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Publisher : CRC Press
ISBN 13 : 9780412818202
Total Pages : 264 pages
Book Rating : 4.8/5 (182 download)

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Book Synopsis Markov Chain Monte Carlo by : Dani Gamerman

Download or read book Markov Chain Monte Carlo written by Dani Gamerman and published by CRC Press. This book was released on 1997-10-01 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bridging the gap between research and application, Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference provides a concise, and integrated account of Markov chain Monte Carlo (MCMC) for performing Bayesian inference. This volume, which was developed from a short course taught by the author at a meeting of Brazilian statisticians and probabilists, retains the didactic character of the original course text. The self-contained text units make MCMC accessible to scientists in other disciplines as well as statisticians. It describes each component of the theory in detail and outlines related software, which is of particular benefit to applied scientists.

Monte Carlo Methods in Bayesian Inference

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Publisher :
ISBN 13 :
Total Pages : 150 pages
Book Rating : 4.:/5 (14 download)

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Book Synopsis Monte Carlo Methods in Bayesian Inference by : Huarui Zhang

Download or read book Monte Carlo Methods in Bayesian Inference written by Huarui Zhang and published by . This book was released on 2016 with total page 150 pages. Available in PDF, EPUB and Kindle. Book excerpt: Monte Carlo methods are becoming more and more popular in statistics due to the fast development of efficient computing technologies. One of the major beneficiaries of this advent is the field of Bayesian inference. The aim of this thesis is two-fold: (i) to explain the theory justifying the validity of the simulation-based schemes in a Bayesian setting (why they should work) and (ii) to apply them in several different types of data analysis that a statistician has to routinely encounter. In Chapter 1, I introduce key concepts in Bayesian statistics. Then we discuss Monte Carlo Simulation methods in detail. Our particular focus in on, Markov Chain Monte Carlo, one of the most important tools in Bayesian inference. We discussed three different variants of this including Metropolis-Hastings Algorithm, Gibbs Sampling and slice sampler. Each of these techniques is theoretically justified and I also discussed the potential questions one needs too resolve to implement them in real-world settings. In Chapter 2, we present Monte Carlo techniques for the commonly used Gaussian models including univariate, multivariate and mixture models. In Chapter 3, I focused on several variants of regression including linear and generalized linear models involving continuous, categorical and count responses. For all these cases, the required posterior distributions are rigorously derived. I complement the methodological description with analysis of multiple real datasets and provide tables and diagrams to summarize the inference. In the last Chapter, a few additional key aspects of Bayesian modeling are mentioned. In conclusion, this thesis emphasizes on the Monte Carlo Simulation application in Bayesian Statistics. It also shows that the Bayesian Statistics, which treats all unknown parameters as random variables with their distributions, becomes efficient, useful and easy to implement through Monte Carlo simulations in lieu of the difficult numerical/theoretical calculations.

Advanced Markov Chain Monte Carlo Methods

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Publisher : John Wiley & Sons
ISBN 13 : 1119956803
Total Pages : 308 pages
Book Rating : 4.1/5 (199 download)

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Book Synopsis Advanced Markov Chain Monte Carlo Methods by : Faming Liang

Download or read book Advanced Markov Chain Monte Carlo Methods written by Faming Liang and published by John Wiley & Sons. This book was released on 2011-07-05 with total page 308 pages. Available in PDF, EPUB and Kindle. Book excerpt: Markov Chain Monte Carlo (MCMC) methods are now an indispensable tool in scientific computing. This book discusses recent developments of MCMC methods with an emphasis on those making use of past sample information during simulations. The application examples are drawn from diverse fields such as bioinformatics, machine learning, social science, combinatorial optimization, and computational physics. Key Features: Expanded coverage of the stochastic approximation Monte Carlo and dynamic weighting algorithms that are essentially immune to local trap problems. A detailed discussion of the Monte Carlo Metropolis-Hastings algorithm that can be used for sampling from distributions with intractable normalizing constants. Up-to-date accounts of recent developments of the Gibbs sampler. Comprehensive overviews of the population-based MCMC algorithms and the MCMC algorithms with adaptive proposals. This book can be used as a textbook or a reference book for a one-semester graduate course in statistics, computational biology, engineering, and computer sciences. Applied or theoretical researchers will also find this book beneficial.

Adaptive Monte Carlo Methods for Bayesian Inference

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Publisher :
ISBN 13 :
Total Pages : 86 pages
Book Rating : 4.:/5 (87 download)

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Book Synopsis Adaptive Monte Carlo Methods for Bayesian Inference by : Mark Zlochin

Download or read book Adaptive Monte Carlo Methods for Bayesian Inference written by Mark Zlochin and published by . This book was released on 2003 with total page 86 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Bayesian Methods for Statistical Analysis

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Publisher : ANU Press
ISBN 13 : 1921934263
Total Pages : 698 pages
Book Rating : 4.9/5 (219 download)

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Book Synopsis Bayesian Methods for Statistical Analysis by : Borek Puza

Download or read book Bayesian Methods for Statistical Analysis written by Borek Puza and published by ANU Press. This book was released on 2015-10-01 with total page 698 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bayesian Methods for Statistical Analysis is a book on statistical methods for analysing a wide variety of data. The book consists of 12 chapters, starting with basic concepts and covering numerous topics, including Bayesian estimation, decision theory, prediction, hypothesis testing, hierarchical models, Markov chain Monte Carlo methods, finite population inference, biased sampling and nonignorable nonresponse. The book contains many exercises, all with worked solutions, including complete computer code. It is suitable for self-study or a semester-long course, with three hours of lectures and one tutorial per week for 13 weeks.

Handbook of Markov Chain Monte Carlo

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Publisher : CRC Press
ISBN 13 : 1420079425
Total Pages : 620 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Handbook of Markov Chain Monte Carlo by : Steve Brooks

Download or read book Handbook of Markov Chain Monte Carlo written by Steve Brooks and published by CRC Press. This book was released on 2011-05-10 with total page 620 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since their popularization in the 1990s, Markov chain Monte Carlo (MCMC) methods have revolutionized statistical computing and have had an especially profound impact on the practice of Bayesian statistics. Furthermore, MCMC methods have enabled the development and use of intricate models in an astonishing array of disciplines as diverse as fisherie

Introducing Monte Carlo Methods with R

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Publisher : Springer Science & Business Media
ISBN 13 : 1441915753
Total Pages : 297 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Introducing Monte Carlo Methods with R by : Christian Robert

Download or read book Introducing Monte Carlo Methods with R written by Christian Robert and published by Springer Science & Business Media. This book was released on 2010 with total page 297 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers the main tools used in statistical simulation from a programmer’s point of view, explaining the R implementation of each simulation technique and providing the output for better understanding and comparison.

An Introduction to Sequential Monte Carlo

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Publisher : Springer Nature
ISBN 13 : 3030478459
Total Pages : 378 pages
Book Rating : 4.0/5 (34 download)

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Book Synopsis An Introduction to Sequential Monte Carlo by : Nicolas Chopin

Download or read book An Introduction to Sequential Monte Carlo written by Nicolas Chopin and published by Springer Nature. This book was released on 2020-10-01 with total page 378 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a general introduction to Sequential Monte Carlo (SMC) methods, also known as particle filters. These methods have become a staple for the sequential analysis of data in such diverse fields as signal processing, epidemiology, machine learning, population ecology, quantitative finance, and robotics. The coverage is comprehensive, ranging from the underlying theory to computational implementation, methodology, and diverse applications in various areas of science. This is achieved by describing SMC algorithms as particular cases of a general framework, which involves concepts such as Feynman-Kac distributions, and tools such as importance sampling and resampling. This general framework is used consistently throughout the book. Extensive coverage is provided on sequential learning (filtering, smoothing) of state-space (hidden Markov) models, as this remains an important application of SMC methods. More recent applications, such as parameter estimation of these models (through e.g. particle Markov chain Monte Carlo techniques) and the simulation of challenging probability distributions (in e.g. Bayesian inference or rare-event problems), are also discussed. The book may be used either as a graduate text on Sequential Monte Carlo methods and state-space modeling, or as a general reference work on the area. Each chapter includes a set of exercises for self-study, a comprehensive bibliography, and a “Python corner,” which discusses the practical implementation of the methods covered. In addition, the book comes with an open source Python library, which implements all the algorithms described in the book, and contains all the programs that were used to perform the numerical experiments.

Monte Carlo Methods for Bayesian Inference in Digital Communications

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Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (89 download)

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Book Synopsis Monte Carlo Methods for Bayesian Inference in Digital Communications by : Zaifei Liu

Download or read book Monte Carlo Methods for Bayesian Inference in Digital Communications written by Zaifei Liu and published by . This book was released on 2007 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Sequential Monte Carlo Methods in Practice

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Publisher : Springer Science & Business Media
ISBN 13 : 1475734379
Total Pages : 590 pages
Book Rating : 4.4/5 (757 download)

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Book Synopsis Sequential Monte Carlo Methods in Practice by : Arnaud Doucet

Download or read book Sequential Monte Carlo Methods in Practice written by Arnaud Doucet and published by Springer Science & Business Media. This book was released on 2013-03-09 with total page 590 pages. Available in PDF, EPUB and Kindle. Book excerpt: Monte Carlo methods are revolutionizing the on-line analysis of data in many fileds. They have made it possible to solve numerically many complex, non-standard problems that were previously intractable. This book presents the first comprehensive treatment of these techniques.

Monte Carlo Methods

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Publisher : American Mathematical Soc.
ISBN 13 : 0821819925
Total Pages : 238 pages
Book Rating : 4.8/5 (218 download)

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Book Synopsis Monte Carlo Methods by : Neal Noah Madras

Download or read book Monte Carlo Methods written by Neal Noah Madras and published by American Mathematical Soc.. This book was released on 2000 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the proceedings of the Workshop on Monte Carlo Methods held at The Fields Institute for Research in Mathematical Sciences (Toronto, 1998). The workshop brought together researchers in physics, statistics, and probability. The papers in this volume - of the invited speakers and contributors to the poster session - represent the interdisciplinary emphasis of the conference. Monte Carlo methods have been used intensively in many branches of scientific inquiry. Markov chain methods have been at the forefront of much of this work, serving as the basis of many numerical studies in statistical physics and related areas since the Metropolis algorithm was introduced in 1953. Statisticians and theoretical computer scientists have used these methods in recent years, working on different fundamental research questions, yet using similar Monte Carlo methodology. This volume focuses on Monte Carlo methods that appear to have wide applicability and emphasizes new methods, practical applications and theoretical analysis. It will be of interest to researchers and graduate students who study and/or use Monte Carlo methods in areas of probability, statistics, theoretical physics, or computer science.

Markov Chain Monte Carlo in Practice

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Publisher : CRC Press
ISBN 13 : 1482214970
Total Pages : 505 pages
Book Rating : 4.4/5 (822 download)

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Book Synopsis Markov Chain Monte Carlo in Practice by : W.R. Gilks

Download or read book Markov Chain Monte Carlo in Practice written by W.R. Gilks and published by CRC Press. This book was released on 1995-12-01 with total page 505 pages. Available in PDF, EPUB and Kindle. Book excerpt: In a family study of breast cancer, epidemiologists in Southern California increase the power for detecting a gene-environment interaction. In Gambia, a study helps a vaccination program reduce the incidence of Hepatitis B carriage. Archaeologists in Austria place a Bronze Age site in its true temporal location on the calendar scale. And in France,

Machine learning using approximate inference

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Publisher : Linköping University Electronic Press
ISBN 13 : 9176851613
Total Pages : 39 pages
Book Rating : 4.1/5 (768 download)

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Book Synopsis Machine learning using approximate inference by : Christian Andersson Naesseth

Download or read book Machine learning using approximate inference written by Christian Andersson Naesseth and published by Linköping University Electronic Press. This book was released on 2018-11-27 with total page 39 pages. Available in PDF, EPUB and Kindle. Book excerpt: Automatic decision making and pattern recognition under uncertainty are difficult tasks that are ubiquitous in our everyday life. The systems we design, and technology we develop, requires us to coherently represent and work with uncertainty in data. Probabilistic models and probabilistic inference gives us a powerful framework for solving this problem. Using this framework, while enticing, results in difficult-to-compute integrals and probabilities when conditioning on the observed data. This means we have a need for approximate inference, methods that solves the problem approximately using a systematic approach. In this thesis we develop new methods for efficient approximate inference in probabilistic models. There are generally two approaches to approximate inference, variational methods and Monte Carlo methods. In Monte Carlo methods we use a large number of random samples to approximate the integral of interest. With variational methods, on the other hand, we turn the integration problem into that of an optimization problem. We develop algorithms of both types and bridge the gap between them. First, we present a self-contained tutorial to the popular sequential Monte Carlo (SMC) class of methods. Next, we propose new algorithms and applications based on SMC for approximate inference in probabilistic graphical models. We derive nested sequential Monte Carlo, a new algorithm particularly well suited for inference in a large class of high-dimensional probabilistic models. Then, inspired by similar ideas we derive interacting particle Markov chain Monte Carlo to make use of parallelization to speed up approximate inference for universal probabilistic programming languages. After that, we show how we can make use of the rejection sampling process when generating gamma distributed random variables to speed up variational inference. Finally, we bridge the gap between SMC and variational methods by developing variational sequential Monte Carlo, a new flexible family of variational approximations.

Explorations in Monte Carlo Methods

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Publisher : Springer Nature
ISBN 13 : 3031559649
Total Pages : 290 pages
Book Rating : 4.0/5 (315 download)

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Book Synopsis Explorations in Monte Carlo Methods by : Ronald W. Shonkwiler

Download or read book Explorations in Monte Carlo Methods written by Ronald W. Shonkwiler and published by Springer Nature. This book was released on with total page 290 pages. Available in PDF, EPUB and Kindle. Book excerpt: