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Microbiome And Machine Learning
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Book Synopsis Microbiome and Machine Learning, Volume II by : Erik Bongcam-Rudloff
Download or read book Microbiome and Machine Learning, Volume II written by Erik Bongcam-Rudloff and published by Frontiers Media SA. This book was released on 2024-10-24 with total page 209 pages. Available in PDF, EPUB and Kindle. Book excerpt: Due to the success of Microbiome and Machine Learning, which collected research results and perspectives of researchers working in the field of machine learning (ML) applied to the analysis of microbiome data, we are launching the second volume to collate any new findings in the field to further our understanding and encourage the participation of experts worldwide in the discussion. The success of ML algorithms in the field is substantially due to their capacity to process high-dimensional data and deal with uncertainty and noise. However, to maximize the combinatory potential of these emerging fields (microbiome and ML), researchers have to deal with some aspects that are complex and inherently related to microbiome data. Microbiome data are convoluted, noisy and highly variable, and non-standard analytical methodologies are required to unlock their clinical and scientific potential. Therefore, although a wide range of statistical modelling and ML methods are available, their application is only sometimes optimal when dealing with microbiome data.
Book Synopsis Metagenomic Systems Biology by : Shailza Singh
Download or read book Metagenomic Systems Biology written by Shailza Singh and published by Springer Nature. This book was released on 2020-12-07 with total page 207 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book serves as an amalgamation of knowledge and principles used in the area of systems and synthetic biology, and targets inter-disciplinary research groups. The readers from diversified areas would be benefited by the valuable resources and information available in one book. Microbiome projects with efficient data handling can fuel progress in the area of microbial synthetic biology by providing a ready to use plug and play chassis. Advances in gene editing technology such as the use of tailor made synthetic transcription factors will further enhance the availability of synthetic devices to be applied in the fields of environment, agriculture and health. The different chapters of the book reviews a broad range of topics, including food microbiome in ecology, use of microbiome in personalized medicine, machine learning in biomedicine. The book also describes ways to harness and exploit the incredible amounts of genomic data. The book is not only limited to medicine but also caters to the needs of environmentalists, biochemical engineers etc. It will be of interest to advanced students and researchers in life sciences, computational biology, microbiology and other inter-disciplinary areas.
Book Synopsis Microbiome and Machine Learning by : Isabel Moreno Indias
Download or read book Microbiome and Machine Learning written by Isabel Moreno Indias and published by Frontiers Media SA. This book was released on 2022-08-02 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Machine Learning with SVM and Other Kernel Methods by : K.P. Soman
Download or read book Machine Learning with SVM and Other Kernel Methods written by K.P. Soman and published by PHI Learning Pvt. Ltd.. This book was released on 2009-02-02 with total page 495 pages. Available in PDF, EPUB and Kindle. Book excerpt: Support vector machines (SVMs) represent a breakthrough in the theory of learning systems. It is a new generation of learning algorithms based on recent advances in statistical learning theory. Designed for the undergraduate students of computer science and engineering, this book provides a comprehensive introduction to the state-of-the-art algorithm and techniques in this field. It covers most of the well known algorithms supplemented with code and data. One Class, Multiclass and hierarchical SVMs are included which will help the students to solve any pattern classification problems with ease and that too in Excel. KEY FEATURES Extensive coverage of Lagrangian duality and iterative methods for optimization Separate chapters on kernel based spectral clustering, text mining, and other applications in computational linguistics and speech processing A chapter on latest sequential minimization algorithms and its modifications to do online learning Step-by-step method of solving the SVM based classification problem in Excel. Kernel versions of PCA, CCA and ICA The CD accompanying the book includes animations on solving SVM training problem in Microsoft EXCEL and by using SVMLight software . In addition, Matlab codes are given for all the formulations of SVM along with the data sets mentioned in the exercise section of each chapter.
Book Synopsis Machine learning and deep learning applications in pathogenic microbiome research by : Gang Ye
Download or read book Machine learning and deep learning applications in pathogenic microbiome research written by Gang Ye and published by Frontiers Media SA. This book was released on 2024-09-30 with total page 162 pages. Available in PDF, EPUB and Kindle. Book excerpt: The pathogenic microbiome is the community of microorganisms that live in humans or animals and cause disease. These microorganisms include bacteria, viruses, fungi, protozoa, etc. They usually live in the host's skin, mouth, intestinal tract, genitourinary tract, etc. Normally, there is a state of equilibrium between the host and these microorganisms, but when this equilibrium is disturbed, these microorganisms become the pathogenic microbiome and cause disease. To advance the field of microbiome research, artificial intelligence methods, especially machine learning and deep learning, have recently been used as important tools due to their powerful predictive and informative potential. Classical machine learning algorithms such as linear regression, random forests, support vector machines, etc. perform well on microbiome data. However, as algorithms have been iteratively updated, these models have long been relegated to the basics. Linear regression models are now more often used to interpret these models more intuitively by using the output of other models as input. Deep learning is a branch of machine learning that involves a large number of neural network structures. Deep learning relies on neurons whose role is to transform the input and propagate it forward to the next neuron. Deep learning is currently being used with spectacular success in areas such as image recognition, text processing and automatic translation. As a result, a growing number of researchers are attempting to apply deep learning techniques to biomedical data analysis. Although there are still challenges in practical applications, such as model interpretability, data availability, model evaluation and selection, machine learning and deep learning are very promising tools in pathogenic microbiome research. This Research Topic, therefore, aims to contribute to the latest advances in machine learning, especially deep learning, and to explore new applications of related techniques in pathogenic microbiome research, trying to find relationships between microbiome and human health as well as the environment by studying high-throughput sequencing data of microbes, laying the foundation for further applications for subsequent treatment or forensic identification. We welcome submissions of Original Research, Brief Research Report, Review, Mini-Review, Methods, Perspective and Opinion articles that focus on, but are not limited to, the utilization of machine learning and deep learning to address the following subtopics. 1. Classification and identification of pathogenic microorganisms 2. Virulence prediction of pathogenic microorganisms 3. Antimicrobial resistance prediction of pathogenic microorganisms 4. Population structure and epidemiology of pathogenic microorganisms-related diseases 5. Immunological studies of pathogenic microorganisms 6. Drug target prediction for pathogenic microorganisms-related diseases
Book Synopsis Deep Learning with Python by : Nikhil Ketkar
Download or read book Deep Learning with Python written by Nikhil Ketkar and published by Apress. This book was released on 2021-04-10 with total page 306 pages. Available in PDF, EPUB and Kindle. Book excerpt: Master the practical aspects of implementing deep learning solutions with PyTorch, using a hands-on approach to understanding both theory and practice. This updated edition will prepare you for applying deep learning to real world problems with a sound theoretical foundation and practical know-how with PyTorch, a platform developed by Facebook’s Artificial Intelligence Research Group. You'll start with a perspective on how and why deep learning with PyTorch has emerged as an path-breaking framework with a set of tools and techniques to solve real-world problems. Next, the book will ground you with the mathematical fundamentals of linear algebra, vector calculus, probability and optimization. Having established this foundation, you'll move on to key components and functionality of PyTorch including layers, loss functions and optimization algorithms. You'll also gain an understanding of Graphical Processing Unit (GPU) based computation, which is essential for training deep learning models. All the key architectures in deep learning are covered, including feedforward networks, convolution neural networks, recurrent neural networks, long short-term memory networks, autoencoders and generative adversarial networks. Backed by a number of tricks of the trade for training and optimizing deep learning models, this edition of Deep Learning with Python explains the best practices in taking these models to production with PyTorch. What You'll Learn Review machine learning fundamentals such as overfitting, underfitting, and regularization. Understand deep learning fundamentals such as feed-forward networks, convolution neural networks, recurrent neural networks, automatic differentiation, and stochastic gradient descent. Apply in-depth linear algebra with PyTorch Explore PyTorch fundamentals and its building blocks Work with tuning and optimizing models Who This Book Is For Beginners with a working knowledge of Python who want to understand Deep Learning in a practical, hands-on manner.
Author :National Academies of Sciences, Engineering, and Medicine Publisher :National Academies Press ISBN 13 :0309468698 Total Pages :123 pages Book Rating :4.3/5 (94 download)
Book Synopsis Environmental Chemicals, the Human Microbiome, and Health Risk by : National Academies of Sciences, Engineering, and Medicine
Download or read book Environmental Chemicals, the Human Microbiome, and Health Risk written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2018-03-01 with total page 123 pages. Available in PDF, EPUB and Kindle. Book excerpt: A great number of diverse microorganisms inhabit the human body and are collectively referred to as the human microbiome. Until recently, the role of the human microbiome in maintaining human health was not fully appreciated. Today, however, research is beginning to elucidate associations between perturbations in the human microbiome and human disease and the factors that might be responsible for the perturbations. Studies have indicated that the human microbiome could be affected by environmental chemicals or could modulate exposure to environmental chemicals. Environmental Chemicals, the Human Microbiome, and Health Risk presents a research strategy to improve our understanding of the interactions between environmental chemicals and the human microbiome and the implications of those interactions for human health risk. This report identifies barriers to such research and opportunities for collaboration, highlights key aspects of the human microbiome and its relation to health, describes potential interactions between environmental chemicals and the human microbiome, reviews the risk-assessment framework and reasons for incorporating chemicalâ€"microbiome interactions.
Book Synopsis The Human Microbiome, Diet, and Health by : Food Forum
Download or read book The Human Microbiome, Diet, and Health written by Food Forum and published by National Academies Press. This book was released on 2013-02-27 with total page 197 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Food Forum convened a public workshop on February 22-23, 2012, to explore current and emerging knowledge of the human microbiome, its role in human health, its interaction with the diet, and the translation of new research findings into tools and products that improve the nutritional quality of the food supply. The Human Microbiome, Diet, and Health: Workshop Summary summarizes the presentations and discussions that took place during the workshop. Over the two day workshop, several themes covered included: The microbiome is integral to human physiology, health, and disease. The microbiome is arguably the most intimate connection that humans have with their external environment, mostly through diet. Given the emerging nature of research on the microbiome, some important methodology issues might still have to be resolved with respect to undersampling and a lack of causal and mechanistic studies. Dietary interventions intended to have an impact on host biology via their impact on the microbiome are being developed, and the market for these products is seeing tremendous success. However, the current regulatory framework poses challenges to industry interest and investment.
Download or read book Gut Feelings written by Alessio Fasano and published by MIT Press. This book was released on 2021-03-16 with total page 551 pages. Available in PDF, EPUB and Kindle. Book excerpt: Why the microbiome--our rich inner ecosystem of microorganisms--may hold the keys to human health. We are at the dawn of a new scientific revolution. Our understanding of how to treat and prevent diseases has been transformed by knowledge of the microbiome--the rich ecosystem of microorganisms that is in and on every human. These microbial hitchhikers may hold the keys to human health. In Gut Feelings, Alessio Fasano and Susie Flaherty show why we must go beyond the older, myopic view of microorganisms as our enemies to a broader understanding of the microbiome as a parallel civilization that we need to understand, respect, and engage with for the benefit of our own health.
Book Synopsis 2018 3rd International Conference on Computer Science and Engineering (UBMK) by : IEEE Staff
Download or read book 2018 3rd International Conference on Computer Science and Engineering (UBMK) written by IEEE Staff and published by . This book was released on 2018-09-20 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: UBMK 2018 provides a forum for researchers, practitioners and educators to present and discuss the most recent research, innovations, trends, experiences, and concerns in the field of computer science, computer software information systems information security engineering and computational methods On the other hand, in parallel with the regular scientific presentations, Heads of Departments of Computer Engineering Council (and other related departments) will meet to discuss the quality issues and problems in the computing field specifically the computing curricula in Turkish Universities as part of the 32rd Convention of the Assembly
Book Synopsis Multi-Objective Machine Learning by : Yaochu Jin
Download or read book Multi-Objective Machine Learning written by Yaochu Jin and published by Springer Science & Business Media. This book was released on 2007-06-10 with total page 657 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recently, increasing interest has been shown in applying the concept of Pareto-optimality to machine learning, particularly inspired by the successful developments in evolutionary multi-objective optimization. It has been shown that the multi-objective approach to machine learning is particularly successful to improve the performance of the traditional single objective machine learning methods, to generate highly diverse multiple Pareto-optimal models for constructing ensembles models and, and to achieve a desired trade-off between accuracy and interpretability of neural networks or fuzzy systems. This monograph presents a selected collection of research work on multi-objective approach to machine learning, including multi-objective feature selection, multi-objective model selection in training multi-layer perceptrons, radial-basis-function networks, support vector machines, decision trees, and intelligent systems.
Book Synopsis Physiology Or Medicine, 1901-1921 by :
Download or read book Physiology Or Medicine, 1901-1921 written by and published by World Scientific. This book was released on 1999 with total page 582 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Artificial Intelligence by : Harvard Business Review
Download or read book Artificial Intelligence written by Harvard Business Review and published by HBR Insights. This book was released on 2019 with total page 160 pages. Available in PDF, EPUB and Kindle. Book excerpt: Companies that don't use AI to their advantage will soon be left behind. Artificial intelligence and machine learning will drive a massive reshaping of the economy and society. What should you and your company be doing right now to ensure that your business is poised for success? These articles by AI experts and consultants will help you understand today's essential thinking on what AI is capable of now, how to adopt it in your organization, and how the technology is likely to evolve in the near future. Artificial Intelligence: The Insights You Need from Harvard Business Review will help you spearhead important conversations, get going on the right AI initiatives for your company, and capitalize on the opportunity of the machine intelligence revolution. Catch up on current topics and deepen your understanding of them with the Insights You Need series from Harvard Business Review. Featuring some of HBR's best and most recent thinking, Insights You Need titles are both a primer on today's most pressing issues and an extension of the conversation, with interesting research, interviews, case studies, and practical ideas to help you explore how a particular issue will impact your company and what it will mean for you and your business.
Book Synopsis Human Microbiome by : Mohsin Khurshid
Download or read book Human Microbiome written by Mohsin Khurshid and published by Springer Nature. This book was released on with total page 721 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Big Data Preprocessing by : Julián Luengo
Download or read book Big Data Preprocessing written by Julián Luengo and published by Springer Nature. This book was released on 2020-03-16 with total page 193 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers a comprehensible overview of Big Data Preprocessing, which includes a formal description of each problem. It also focuses on the most relevant proposed solutions. This book illustrates actual implementations of algorithms that helps the reader deal with these problems. This book stresses the gap that exists between big, raw data and the requirements of quality data that businesses are demanding. This is called Smart Data, and to achieve Smart Data the preprocessing is a key step, where the imperfections, integration tasks and other processes are carried out to eliminate superfluous information. The authors present the concept of Smart Data through data preprocessing in Big Data scenarios and connect it with the emerging paradigms of IoT and edge computing, where the end points generate Smart Data without completely relying on the cloud. Finally, this book provides some novel areas of study that are gathering a deeper attention on the Big Data preprocessing. Specifically, it considers the relation with Deep Learning (as of a technique that also relies in large volumes of data), the difficulty of finding the appropriate selection and concatenation of preprocessing techniques applied and some other open problems. Practitioners and data scientists who work in this field, and want to introduce themselves to preprocessing in large data volume scenarios will want to purchase this book. Researchers that work in this field, who want to know which algorithms are currently implemented to help their investigations, may also be interested in this book.
Book Synopsis Statistical Analysis of Microbiome Data with R by : Yinglin Xia
Download or read book Statistical Analysis of Microbiome Data with R written by Yinglin Xia and published by Springer. This book was released on 2018-10-06 with total page 518 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique book addresses the statistical modelling and analysis of microbiome data using cutting-edge R software. It includes real-world data from the authors’ research and from the public domain, and discusses the implementation of R for data analysis step by step. The data and R computer programs are publicly available, allowing readers to replicate the model development and data analysis presented in each chapter, so that these new methods can be readily applied in their own research. The book also discusses recent developments in statistical modelling and data analysis in microbiome research, as well as the latest advances in next-generation sequencing and big data in methodological development and applications. This timely book will greatly benefit all readers involved in microbiome, ecology and microarray data analyses, as well as other fields of research.
Book Synopsis Artificial Intelligence in Healthcare by : Adam Bohr
Download or read book Artificial Intelligence in Healthcare written by Adam Bohr and published by Academic Press. This book was released on 2020-06-21 with total page 385 pages. Available in PDF, EPUB and Kindle. Book excerpt: Artificial Intelligence (AI) in Healthcare is more than a comprehensive introduction to artificial intelligence as a tool in the generation and analysis of healthcare data. The book is split into two sections where the first section describes the current healthcare challenges and the rise of AI in this arena. The ten following chapters are written by specialists in each area, covering the whole healthcare ecosystem. First, the AI applications in drug design and drug development are presented followed by its applications in the field of cancer diagnostics, treatment and medical imaging. Subsequently, the application of AI in medical devices and surgery are covered as well as remote patient monitoring. Finally, the book dives into the topics of security, privacy, information sharing, health insurances and legal aspects of AI in healthcare. - Highlights different data techniques in healthcare data analysis, including machine learning and data mining - Illustrates different applications and challenges across the design, implementation and management of intelligent systems and healthcare data networks - Includes applications and case studies across all areas of AI in healthcare data
