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Mathematical Approaches To Biomolecular Structure And Dynamics
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Book Synopsis Mathematical Approaches to Biomolecular Structure and Dynamics by : Jill P. Mesirov
Download or read book Mathematical Approaches to Biomolecular Structure and Dynamics written by Jill P. Mesirov and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: This IMA Volume in Mathematics and its Applications MATHEMATICAL APPROACHES TO BIOMOLECULAR STRUCTURE AND DYNAMICS is one of the two volumes based on the proceedings of the 1994 IMA Sum mer Program on "Molecular Biology" and comprises Weeks 3 and 4 of the four-week program. Weeks 1 and 2 appeared as Volume 81: Genetic Mapping and DNA Sequencing. We thank Jill P. Mesirov, Klaus Schulten, and De Witt Sumners for organizing Weeks 3 and 4 of the workshop and for editing the proceedings. We also take this opportunity to thank the National Institutes of Health (NIH) (National Center for Human Genome Research), the National Science Foundation (NSF) (Biological Instrumen tation and Resources), and the Department of Energy (DOE), whose fi nancial support made the summer program possible. A vner Friedman Robert Gulliver v PREFACE The revolutionary progress in molecular biology within the last 30 years opens the way to full understanding of the molecular structures and mech anisms of living organisms. Interdisciplinary research in mathematics and molecular biology is driven by ever growing experimental, theoretical and computational power. The mathematical sciences accompany and support much of the progress achieved by experiment and computation as well as provide insight into geometric and topological properties of biomolecular structure and processes. This volume consists of a representative sample of the papers presented during the last two weeks of the month-long Institute for Mathematics and Its Applications Summer 1994 Program in Molecular Biology.
Book Synopsis Mathematical Approaches to Molecular Structural Biology by : Subrata Pal
Download or read book Mathematical Approaches to Molecular Structural Biology written by Subrata Pal and published by Elsevier. This book was released on 2022-11-19 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical Approaches to Molecular Structural Biology offers a comprehensive overview of the mathematical foundations behind the study of biomolecular structure. Initial chapters provide an introduction to the mathematics associated with the study of molecular structure, such as vector spaces and matrices, linear systems, matrix decomposition, vector calculus, probability and statistics. The book then moves on to more advanced areas of molecular structural biology based on the mathematical concepts discussed in earlier chapters. Here, key methods such as X-ray crystallography and cryo-electron microscopy are explored, in addition to biomolecular structure dynamics within the context of mathematics and physics. This book equips readers with an understanding of the fundamental principles behind structural biology, providing researchers with a strong groundwork for further investigation in both this and related fields. Includes a detailed introduction to key mathematical principles and their application to molecular structural biology Explores the mathematical underpinnings behind advanced techniques such as X-ray crystallography and Cryo-electron microscopy Features step-by-step protocols that illustrate mathematical and statistical principles for studying molecular structure and dynamics Provides a basis for further investigation into the field of computational molecular biology Includes figures and graphs throughout to visually demonstrate the concepts discussed
Author :Carlos Castillo-Chavez Publisher :Springer Science & Business Media ISBN 13 :9780387953540 Total Pages :396 pages Book Rating :4.9/5 (535 download)
Book Synopsis Mathematical Approaches for Emerging and Reemerging Infectious Diseases: An Introduction by : Carlos Castillo-Chavez
Download or read book Mathematical Approaches for Emerging and Reemerging Infectious Diseases: An Introduction written by Carlos Castillo-Chavez and published by Springer Science & Business Media. This book was released on 2002-05-02 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book grew out of the discussions and presentations that began during the Workshop on Emerging and Reemerging Diseases (May 17-21, 1999) sponsored by the Institute for Mathematics and its Application (IMA) at the University of Minnesota with the support of NIH and NSF. The workshop started with a two-day tutorial session directed at ecologists, epidemiologists, immunologists, mathematicians, and scientists interested in the study of disease dynamics. The core of this first volume, Volume 125, covers tutorial and research contributions on the use of dynamical systems (deterministic discrete, delay, PDEs, and ODEs models) and stochastic models in disease dynamics. The volume includes the study of cancer, HIV, pertussis, and tuberculosis. Beginning graduate students in applied mathematics, scientists in the natural, social, or health sciences or mathematicians who want to enter the fields of mathematical and theoretical epidemiology will find this book useful.
Author :Carlos Castillo-Chavez Publisher :Springer Science & Business Media ISBN 13 :1461300657 Total Pages :375 pages Book Rating :4.4/5 (613 download)
Book Synopsis Mathematical Approaches for Emerging and Reemerging Infectious Diseases: Models, Methods, and Theory by : Carlos Castillo-Chavez
Download or read book Mathematical Approaches for Emerging and Reemerging Infectious Diseases: Models, Methods, and Theory written by Carlos Castillo-Chavez and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 375 pages. Available in PDF, EPUB and Kindle. Book excerpt: This IMA Volume in Mathematics and its Applications MATHEMATICAL APPROACHES FOR EMERGING AND REEMERGING INFECTIOUS DISEASES: MODELS, AND THEORY METHODS is based on the proceedings of a successful one week workshop. The pro ceedings of the two-day tutorial which preceded the workshop "Introduction to Epidemiology and Immunology" appears as IMA Volume 125: Math ematical Approaches for Emerging and Reemerging Infectious Diseases: An Introduction. The tutorial and the workshop are integral parts of the September 1998 to June 1999 IMA program on "MATHEMATICS IN BI OLOGY. " I would like to thank Carlos Castillo-Chavez (Director of the Math ematical and Theoretical Biology Institute and a member of the Depart ments of Biometrics, Statistics and Theoretical and Applied Mechanics, Cornell University), Sally M. Blower (Biomathematics, UCLA School of Medicine), Pauline van den Driessche (Mathematics and Statistics, Uni versity of Victoria), and Denise Kirschner (Microbiology and Immunology, University of Michigan Medical School) for their superb roles as organizers of the meetings and editors of the proceedings. Carlos Castillo-Chavez, es pecially, made a major contribution by spearheading the editing process. I am also grateful to Kenneth L. Cooke (Mathematics, Pomona College), for being one of the workshop organizers and to Abdul-Aziz Yakubu (Mathe matics, Howard University) for serving as co-editor of the proceedings. I thank Simon A. Levin (Ecology and Evolutionary Biology, Princeton Uni versity) for providing an introduction.
Book Synopsis Mathematics of DNA Structure, Function and Interactions by : Craig John Benham
Download or read book Mathematics of DNA Structure, Function and Interactions written by Craig John Benham and published by Springer Science & Business Media. This book was released on 2010-04-29 with total page 359 pages. Available in PDF, EPUB and Kindle. Book excerpt: Propelled by the success of the sequencing of the human and many related genomes, molecular and cellular biology has delivered significant scientific breakthroughs. Mathematics (broadly defined) continues to play a major role in this effort, helping to discover the secrets of life by working collaboratively with bench biologists, chemists and physicists. Because of its outstanding record of interdisciplinary research and training, the IMA was an ideal venue for the 2007-2008 IMA thematic year on Mathematics of Molecular and Cellular Biology. The kickoff event for this thematic year was a tutorial on Mathematics of Nucleic Acids, followed by the workshop Mathematics of Molecular and Cellular Biology, held September 15--21 at the IMA. This volume is dedicated to the memory of Nicholas R. Cozzarelli, a dynamic leader who fostered research and training at the interface between mathematics and molecular biology. It contains a personal remembrance of Nick Cozzarelli, plus 15 papers contributed by workshop speakers. The papers give an overview of state-of-the-art mathematical approaches to the understanding of DNA structure and function, and the interaction of DNA with proteins that mediate vital life processes.
Book Synopsis Geometric Structures of Statistical Physics, Information Geometry, and Learning by : Frédéric Barbaresco
Download or read book Geometric Structures of Statistical Physics, Information Geometry, and Learning written by Frédéric Barbaresco and published by Springer Nature. This book was released on 2021-06-27 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: Machine learning and artificial intelligence increasingly use methodological tools rooted in statistical physics. Conversely, limitations and pitfalls encountered in AI question the very foundations of statistical physics. This interplay between AI and statistical physics has been attested since the birth of AI, and principles underpinning statistical physics can shed new light on the conceptual basis of AI. During the last fifty years, statistical physics has been investigated through new geometric structures allowing covariant formalization of the thermodynamics. Inference methods in machine learning have begun to adapt these new geometric structures to process data in more abstract representation spaces. This volume collects selected contributions on the interplay of statistical physics and artificial intelligence. The aim is to provide a constructive dialogue around a common foundation to allow the establishment of new principles and laws governing these two disciplines in a unified manner. The contributions were presented at the workshop on the Joint Structures and Common Foundation of Statistical Physics, Information Geometry and Inference for Learning which was held in Les Houches in July 2020. The various theoretical approaches are discussed in the context of potential applications in cognitive systems, machine learning, signal processing.
Author :Stuart G. Whittington Publisher :Springer Science & Business Media ISBN 13 :1461217121 Total Pages :209 pages Book Rating :4.4/5 (612 download)
Book Synopsis Topology and Geometry in Polymer Science by : Stuart G. Whittington
Download or read book Topology and Geometry in Polymer Science written by Stuart G. Whittington and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 209 pages. Available in PDF, EPUB and Kindle. Book excerpt: This IMA Volume in Mathematics and its Applications TOPOLOGY AND GEOMETRY IN POLYMER SCIENCE is based on the proceedings of a very successful one-week workshop with the same title. This workshop was an integral part of the 1995-1996 IMA program on "Mathematical Methods in Materials Science." We would like to thank Stuart G. Whittington, De Witt Sumners, and Timothy Lodge for their excellent work as organizers of the meeting and for editing the proceedings. We also take this opportunity to thank the National Science Foun dation (NSF), the Army Research Office (ARO) and the Office of Naval Research (ONR), whose financial support made the workshop possible. A vner Friedman Robert Gulliver v PREFACE This book is the product of a workshop on Topology and Geometry of Polymers, held at the IMA in June 1996. The workshop brought together topologists, combinatorialists, theoretical physicists and polymer scientists, who share an interest in characterizing and predicting the microscopic en tanglement properties of polymers, and their effect on macroscopic physical properties.
Download or read book Ideal Knots written by A. Stasiak and published by World Scientific. This book was released on 1998 with total page 426 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book, experts in different fields of mathematics, physics, chemistry and biology present unique forms of knots which satisfy certain preassigned criteria relevant to a given field. They discuss the shapes of knotted magnetic flux lines, the forms of knotted arrangements of bistable chemical systems, the trajectories of knotted solitons, and the shapes of knots which can be tied using the shortest piece of elastic rope with a constant diameter.
Book Synopsis Mathematical Models for Biological Pattern Formation by : Philip K. Maini
Download or read book Mathematical Models for Biological Pattern Formation written by Philip K. Maini and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 327 pages. Available in PDF, EPUB and Kindle. Book excerpt: This 121st IMA volume, entitled MATHEMATICAL MODELS FOR BIOLOGICAL PATTERN FORMATION is the first of a new series called FRONTIERS IN APPLICATION OF MATHEMATICS. The FRONTIERS volumes are motivated by IMA pro grams and workshops, but are specially planned and written to provide an entree to and assessment of exciting new areas for the application of mathematical tools and analysis. The emphasis in FRONTIERS volumes is on surveys, exposition and outlook, to attract more mathematicians and other scientists to the study of these areas and to focus efforts on the most important issues, rather than papers on the most recent research results aimed at an audience of specialists. The present volume of peer-reviewed papers grew out of the 1998-99 IMA program on "Mathematics in Biology," in particular the Fall 1998 em phasis on "Theoretical Problems in Developmental Biology and Immunol ogy." During that period there were two workshops on Pattern Formation and Morphogenesis, organized by Professors Murray, Maini and Othmer. James Murray was one of the principal organizers for the entire year pro gram. I am very grateful to James Murray for providing an introduction, and to Philip Maini and Hans Othmer for their excellent work in planning and preparing this first FRONTIERS volume. I also take this opportunity to thank the National Science Foundation, whose financial support of the IMA made the Mathematics in Biology pro gram possible.
Book Synopsis Essays on Mathematical Robotics by : John Baillieul
Download or read book Essays on Mathematical Robotics written by John Baillieul and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: The chapters in this book present an excellent exposition of recent developments in both robotics and nonlinear control centering around "hyper-redundancy", highly oscillatory inputs, optimal control, exterior differential systems, and the use of generic loops. The principal topics covered in the book are: adaptive control for a class of nonlinear systems, event-based motion planning, nonlinear control synthesis and path planning in robotics with special emphasis on nonholonomic and "hyper-redundant" robotic systems, control design and stabilization of driftless affine control systems (of the type arising in the kinematic control of nonholonomic robotic systems), control design methods for Hamiltonian systems and exterior differential systems. The chapter covering exterior differential systems contains a detailed introduction to the use of exterior differential methods, including the Goursat and extended Goursat normal forms and their application to path planning for nonholonomic systems.
Book Synopsis Mathematics of the Internet by : Brenda Dietrich
Download or read book Mathematics of the Internet written by Brenda Dietrich and published by Springer Science & Business Media. This book was released on 2001-12-14 with total page 190 pages. Available in PDF, EPUB and Kindle. Book excerpt: The use of the internet for commerce has spawned a variety of auctions, marketplaces, and exchanges for trading everything from bandwidth to books. Mechanisms for bidding agents, dynamic pricing, and combinatorial bids are being implemented in support of internet-based auctions, giving rise to new versions of optimization and resource allocation models. This volume, a collection of papers from an IMA "Hot Topics" workshop in internet auctions, includes descriptions of real and proposed auctions, complete with mathematical model formulations, theoretical results, solution approaches, and computational studies. This volume also provides a mathematical programming perspective on open questions in auction theory, and provides a glimpse of the growing area of dynamic pricing.
Book Synopsis Mathematics in Industrial Problems by : Avner Friedman
Download or read book Mathematics in Industrial Problems written by Avner Friedman and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 198 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the tenth volume in the series "Mathematics in Industrial Prob lems. " The motivation for these volumes is to foster interaction between Industry and Mathematics at the "grass roots level;" that is, at the level of specific problems. These problems come from Industry: they arise from models developed by the industrial scientists in ventures directed at the manufacture of new or improved products. At the same time, these prob lems have the potential for mathematical challenge and novelty. To identify such problems, I have visited industries and had discussions with their scientists. Some of the scientists have subsequently presented their problems in the IMA Seminar on Industrial Problems. The book is based on the seminar presentations and on questions raised in subse quent discussions. Each chapter is devoted to one of the talks and is self contained. The chapters usually provide references to the mathematical literature and a list of open problems which are of interest to the industrial scientists. For some problems a partial solution is indicated briefly. The last chapter of the book contains a short description of solutions to some of the problems raised in the previous volume, as well as references to papers in which such solutions have been published. The speakers in the Seminar on Industrial Problems have given us at the IMA hours of delight and discovery.
Book Synopsis Mathematics of Multiscale Materials by : Kenneth M. Golden
Download or read book Mathematics of Multiscale Materials written by Kenneth M. Golden and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 290 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 1995-1996 program at the Institute for Mathematics and its Applications was devoted to mathematical methods in material science, and was attended by materials scientists, physicists, geologists, chemists engineers, and mathematicians. This volume contains chapters which emerged from four of the workshops, focusing on disordered materials; interfaces and thin films; mechanical response of materials from angstroms to meters; and phase transformation, composite materials and microstructure. The scales treated in these workshops ranged from the atomic to the macroscopic, the microstructures from ordered to random, and the treatments from "purely" theoretical to highly applied. Taken together, these results form a compelling and broad account of many aspects of the science of multi-scale materials, and will hopefully inspire research across the self-imposed barriers of twentieth century science.
Book Synopsis The Mathematics of Information Coding, Extraction and Distribution by : George Cybenko
Download or read book The Mathematics of Information Coding, Extraction and Distribution written by George Cybenko and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 142 pages. Available in PDF, EPUB and Kindle. Book excerpt: High performance computing consumes and generates vast amounts of data, and the storage, retrieval, and transmission of this data are major obstacles to effective use of computing power. Challenges inherent in all of these operations are security, speed, reliability, authentication and reproducibility. This workshop focused on a wide variety of technical results aimed at meeting these challenges. Topics ranging from the mathematics of coding theory to the practicalities of copyright preservation for Internet resources drew spirited discussion and interaction among experts in diverse but related fields. We hope this volume contributes to continuing this dialogue.
Book Synopsis Molecular Modeling and Simulation by : Tamar Schlick
Download or read book Molecular Modeling and Simulation written by Tamar Schlick and published by Springer Science & Business Media. This book was released on 2013-04-18 with total page 669 pages. Available in PDF, EPUB and Kindle. Book excerpt: Very broad overview of the field intended for an interdisciplinary audience; Lively discussion of current challenges written in a colloquial style; Author is a rising star in this discipline; Suitably accessible for beginners and suitably rigorous for experts; Features extensive four-color illustrations; Appendices featuring homework assignments and reading lists complement the material in the main text
Book Synopsis Computational Molecular Dynamics: Challenges, Methods, Ideas by : Peter Deuflhard
Download or read book Computational Molecular Dynamics: Challenges, Methods, Ideas written by Peter Deuflhard and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 500 pages. Available in PDF, EPUB and Kindle. Book excerpt: On May 21-24, 1997 the Second International Symposium on Algorithms for Macromolecular Modelling was held at the Konrad Zuse Zentrum in Berlin. The event brought together computational scientists in fields like biochemistry, biophysics, physical chemistry, or statistical physics and numerical analysts as well as computer scientists working on the advancement of algorithms, for a total of over 120 participants from 19 countries. In the course of the symposium, the speakers agreed to produce a representative volume that combines survey articles and original papers (all refereed) to give an impression of the present state of the art of Molecular Dynamics. The 29 articles of the book reflect the main topics of the Berlin meeting which were i) Conformational Dynamics, ii) Thermodynamic Modelling, iii) Advanced Time-Stepping Algorithms, iv) Quantum-Classical Simulations and Fast Force Field and v) Fast Force Field Evaluation.
Book Synopsis Quasiclassical Methods by : Jeffrey Rauch
Download or read book Quasiclassical Methods written by Jeffrey Rauch and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 236 pages. Available in PDF, EPUB and Kindle. Book excerpt: This IMA Volume in Mathematics and its Applications QUASICLASSICAL METHODS is based on the proceedings of a very successful one-week workshop with the same title, which was an integral part of the 1994-1995 IMA program on "Waves and Scattering." We would like to thank Jeffrey Rauch and Barry Simon for their excellent work as organizers of the meeting. We also take this opportunity to thank the National Science Foun dation (NSF), the Army Research Office (ARO) and the Office of Naval Research (ONR), whose financial support made the workshop possible. A vner Friedman Robert Gulliver v PREFACE There are a large number of problems where qualitative features of a partial differential equation in an appropriate regime are determined by the behavior of an associated ordinary differential equation. The example which gives the area its name is the limit of quantum mechanical Hamil tonians (Schrodinger operators) as Planck's constant h goes to zero, which is determined by the corresponding classical mechanical system. A sec ond example is linear wave equations with highly oscillatory initial data. The solutions are described by geometric optics whose centerpiece are rays which are solutions of ordinary differential equations analogous to the clas sical mechanics equations in the example above. Much recent work has concerned with understanding terms beyond the leading term determined by the quasi classical limit. Two examples of this involve Weyl asymptotics and the large-Z limit of atomic Hamiltonians, both areas of current research.
