Introduction To Machine Learning And Bioinformatics

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Introduction to Machine Learning and Bioinformatics

Author : Sushmita Mitra
Publisher : CRC Press
ISBN 13 : 1420011782
Total Pages : 386 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Introduction to Machine Learning and Bioinformatics by : Sushmita Mitra

Download or read book Introduction to Machine Learning and Bioinformatics written by Sushmita Mitra and published by CRC Press. This book was released on 2008-06-05 with total page 386 pages. Available in PDF, EPUB and Kindle. Book excerpt: Lucidly Integrates Current Activities Focusing on both fundamentals and recent advances, Introduction to Machine Learning and Bioinformatics presents an informative and accessible account of the ways in which these two increasingly intertwined areas relate to each other. Examines Connections between Machine Learning & Bioinformatics The book begins with a brief historical overview of the technological developments in biology. It then describes the main problems in bioinformatics and the fundamental concepts and algorithms of machine learning. After forming this foundation, the authors explore how machine learning techniques apply to bioinformatics problems, such as electron density map interpretation, biclustering, DNA sequence analysis, and tumor classification. They also include exercises at the end of some chapters and offer supplementary materials on their website. Explores How Machine Learning Techniques Can Help Solve Bioinformatics Problems Shedding light on aspects of both machine learning and bioinformatics, this text shows how the innovative tools and techniques of machine learning help extract knowledge from the deluge of information produced by today’s biological experiments.

Machine Learning in Bioinformatics

Author : Yanqing Zhang
Publisher : John Wiley & Sons
ISBN 13 : 0470397411
Total Pages : 476 pages
Book Rating : 4.4/5 (73 download)

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Book Synopsis Machine Learning in Bioinformatics by : Yanqing Zhang

Download or read book Machine Learning in Bioinformatics written by Yanqing Zhang and published by John Wiley & Sons. This book was released on 2009-02-23 with total page 476 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to machine learning methods and their applications to problems in bioinformatics Machine learning techniques are increasingly being used to address problems in computational biology and bioinformatics. Novel computational techniques to analyze high throughput data in the form of sequences, gene and protein expressions, pathways, and images are becoming vital for understanding diseases and future drug discovery. Machine learning techniques such as Markov models, support vector machines, neural networks, and graphical models have been successful in analyzing life science data because of their capabilities in handling randomness and uncertainty of data noise and in generalization. From an internationally recognized panel of prominent researchers in the field, Machine Learning in Bioinformatics compiles recent approaches in machine learning methods and their applications in addressing contemporary problems in bioinformatics. Coverage includes: feature selection for genomic and proteomic data mining; comparing variable selection methods in gene selection and classification of microarray data; fuzzy gene mining; sequence-based prediction of residue-level properties in proteins; probabilistic methods for long-range features in biosequences; and much more. Machine Learning in Bioinformatics is an indispensable resource for computer scientists, engineers, biologists, mathematicians, researchers, clinicians, physicians, and medical informaticists. It is also a valuable reference text for computer science, engineering, and biology courses at the upper undergraduate and graduate levels.

Bioinformatics

Author : Pierre Baldi
Publisher : MIT Press (MA)
ISBN 13 : 9780262024426
Total Pages : 351 pages
Book Rating : 4.0/5 (244 download)

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Book Synopsis Bioinformatics by : Pierre Baldi

Download or read book Bioinformatics written by Pierre Baldi and published by MIT Press (MA). This book was released on 1998 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: An unprecedented wealth of data is being generated by genome sequencing projects and other experimental efforts to determine the structure and function of biological molecules. The demands and opportunities for interpreting these data are expanding more than ever. Biotechnology, pharmacology, and medicine will be particularly affected by the new results and the increased understanding of life at the molecular level. Bioinformatics is the development and application of computer methods for analysis, interpretation, and prediction, as well as for the design of experiments. It has emerged as a strategic frontier between biology and computer science. Machine learning approaches (e.g., neural networks, hidden Markov models, and belief networks) are ideally suited for areas where there is a lot of data but little theory—and this is exactly the situation in molecular biology. As with its predecessor, statistical model fitting, the goal in machine learning is to extract useful information from a body of data by building good probabilistic models. The particular twist behind machine learning, however, is to automate the process as much as possible. In this book, Pierre Baldi and Soren Brunak present the key machine learning approaches and apply them to the computational problems encountered in the analysis of biological data. The book is aimed at two types of researchers and students. First are the biologists and biochemists who need to understand new data-driven algorithms, such as neural networks and hidden Markov models, in the context of biological sequences and their molecular structure and function. Second are those with a primary background in physics, mathematics, statistics, or computer science who need to know more about specific applications in molecular biology.

Artificial Intelligence in Bioinformatics

Author : Mario Cannataro
Publisher : Elsevier
ISBN 13 : 0128229292
Total Pages : 270 pages
Book Rating : 4.1/5 (282 download)

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Book Synopsis Artificial Intelligence in Bioinformatics by : Mario Cannataro

Download or read book Artificial Intelligence in Bioinformatics written by Mario Cannataro and published by Elsevier. This book was released on 2022-05-12 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: Artificial Intelligence in Bioinformatics: From Omics Analysis to Deep Learning and Network Mining reviews the main applications of the topic, from omics analysis to deep learning and network mining. The book includes a rigorous introduction on bioinformatics, also reviewing how methods are incorporated in tasks and processes. In addition, it presents methods and theory, including content for emergent fields such as Sentiment Analysis and Network Alignment. Other sections survey how Artificial Intelligence is exploited in bioinformatics applications, including sequence analysis, structure analysis, functional analysis, protein classification, omics analysis, biomarker discovery, integrative bioinformatics, protein interaction analysis, metabolic networks analysis, and much more. - Bridges the gap between computer science and bioinformatics, combining an introduction to Artificial Intelligence methods with a systematic review of its applications in the life sciences - Brings readers up-to-speed on current trends and methods in a dynamic and growing field - Provides academic teachers with a complete resource, covering fundamental concepts as well as applications

Introduction to Machine Learning

Author : Ethem Alpaydin
Publisher : MIT Press
ISBN 13 : 0262028182
Total Pages : 639 pages
Book Rating : 4.2/5 (62 download)

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Book Synopsis Introduction to Machine Learning by : Ethem Alpaydin

Download or read book Introduction to Machine Learning written by Ethem Alpaydin and published by MIT Press. This book was released on 2014-08-22 with total page 639 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction -- Supervised learning -- Bayesian decision theory -- Parametric methods -- Multivariate methods -- Dimensionality reduction -- Clustering -- Nonparametric methods -- Decision trees -- Linear discrimination -- Multilayer perceptrons -- Local models -- Kernel machines -- Graphical models -- Brief contents -- Hidden markov models -- Bayesian estimation -- Combining multiple learners -- Reinforcement learning -- Design and analysis of machine learning experiments.

Data Analytics in Bioinformatics

Author : Rabinarayan Satpathy
Publisher : John Wiley & Sons
ISBN 13 : 111978560X
Total Pages : 433 pages
Book Rating : 4.1/5 (197 download)

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Book Synopsis Data Analytics in Bioinformatics by : Rabinarayan Satpathy

Download or read book Data Analytics in Bioinformatics written by Rabinarayan Satpathy and published by John Wiley & Sons. This book was released on 2021-01-20 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: Machine learning techniques are increasingly being used to address problems in computational biology and bioinformatics. Novel machine learning computational techniques to analyze high throughput data in the form of sequences, gene and protein expressions, pathways, and images are becoming vital for understanding diseases and future drug discovery. Machine learning techniques such as Markov models, support vector machines, neural networks, and graphical models have been successful in analyzing life science data because of their capabilities in handling randomness and uncertainty of data noise and in generalization. Machine Learning in Bioinformatics compiles recent approaches in machine learning methods and their applications in addressing contemporary problems in bioinformatics approximating classification and prediction of disease, feature selection, dimensionality reduction, gene selection and classification of microarray data and many more.

Bioinformatics, second edition

Author : Pierre Baldi
Publisher : MIT Press
ISBN 13 : 9780262025065
Total Pages : 492 pages
Book Rating : 4.0/5 (25 download)

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Book Synopsis Bioinformatics, second edition by : Pierre Baldi

Download or read book Bioinformatics, second edition written by Pierre Baldi and published by MIT Press. This book was released on 2001-07-20 with total page 492 pages. Available in PDF, EPUB and Kindle. Book excerpt: A guide to machine learning approaches and their application to the analysis of biological data. An unprecedented wealth of data is being generated by genome sequencing projects and other experimental efforts to determine the structure and function of biological molecules. The demands and opportunities for interpreting these data are expanding rapidly. Bioinformatics is the development and application of computer methods for management, analysis, interpretation, and prediction, as well as for the design of experiments. Machine learning approaches (e.g., neural networks, hidden Markov models, and belief networks) are ideally suited for areas where there is a lot of data but little theory, which is the situation in molecular biology. The goal in machine learning is to extract useful information from a body of data by building good probabilistic models—and to automate the process as much as possible. In this book Pierre Baldi and Søren Brunak present the key machine learning approaches and apply them to the computational problems encountered in the analysis of biological data. The book is aimed both at biologists and biochemists who need to understand new data-driven algorithms and at those with a primary background in physics, mathematics, statistics, or computer science who need to know more about applications in molecular biology. This new second edition contains expanded coverage of probabilistic graphical models and of the applications of neural networks, as well as a new chapter on microarrays and gene expression. The entire text has been extensively revised.

OMICS

Author : Debmalya Barh
Publisher : CRC Press
ISBN 13 : 1466562811
Total Pages : 721 pages
Book Rating : 4.4/5 (665 download)

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Book Synopsis OMICS by : Debmalya Barh

Download or read book OMICS written by Debmalya Barh and published by CRC Press. This book was released on 2013-03-26 with total page 721 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the advent of new technologies and acquired knowledge, the number of fields in omics and their applications in diverse areas are rapidly increasing in the postgenomics era. Such emerging fields—including pharmacogenomics, toxicogenomics, regulomics, spliceomics, metagenomics, and environomics—present budding solutions to combat global challenges in biomedicine, agriculture, and the environment. OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences provides valuable insights into the applications of modern omics technologies to real-world problems in the life sciences. Filling a gap in the literature, it offers a broad, multidisciplinary view of current and emerging applications of omics in a single volume. Written by highly experienced active researchers, each chapter describes a particular area of omics and the associated technologies and applications. Topics covered include: Proteomics, epigenomics, and pharmacogenomics Toxicogenomics and the assessment of environmental pollutants Applications of plant metabolomics Nutrigenomics and its therapeutic applications Microalgal omics and omics approaches in biofuel production Next-generation sequencing and omics technology for transgenic plant analysis Omics approaches in crop improvement Engineering dark-operative chlorophyll synthesis Computational regulomics Omics techniques for the analysis of RNA splicing New fields, including metagenomics, glycomics, and miRNA Breast cancer biomarkers for early detection Environomics strategies for environmental sustainability This timely book explores a wide range of omics application areas in the biomedical, agricultural, and environmental sciences. Throughout, it highlights working solutions as well as open problems and future challenges. Demonstrating the diversity of omics, it introduces readers to state-of-the-art developments and trends in omics-driven research.

A Guide to Applied Machine Learning for Biologists

Author : Mohammad "Sufian" Badar
Publisher : Springer Nature
ISBN 13 : 3031222067
Total Pages : 273 pages
Book Rating : 4.0/5 (312 download)

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Book Synopsis A Guide to Applied Machine Learning for Biologists by : Mohammad "Sufian" Badar

Download or read book A Guide to Applied Machine Learning for Biologists written by Mohammad "Sufian" Badar and published by Springer Nature. This book was released on 2023-06-21 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook is an introductory guide to applied machine learning, specifically for biology students. It familiarizes biology students with the basics of modern computer science and mathematics and emphasizes the real-world applications of these subjects. The chapters give an overview of computer systems and programming languages to establish a basic understanding of the important concepts in computer systems. Readers are introduced to machine learning and artificial intelligence in the field of bioinformatics, connecting these applications to systems biology, biological data analysis and predictions, and healthcare diagnosis and treatment. This book offers a necessary foundation for more advanced computer-based technologies used in biology, employing case studies, real-world issues, and various examples to guide the reader from the basic prerequisites to machine learning and its applications.

Machine Learning in Non-Stationary Environments

Author : Masashi Sugiyama
Publisher : MIT Press
ISBN 13 : 0262300435
Total Pages : 279 pages
Book Rating : 4.2/5 (623 download)

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Book Synopsis Machine Learning in Non-Stationary Environments by : Masashi Sugiyama

Download or read book Machine Learning in Non-Stationary Environments written by Masashi Sugiyama and published by MIT Press. This book was released on 2012-03-30 with total page 279 pages. Available in PDF, EPUB and Kindle. Book excerpt: Theory, algorithms, and applications of machine learning techniques to overcome “covariate shift” non-stationarity. As the power of computing has grown over the past few decades, the field of machine learning has advanced rapidly in both theory and practice. Machine learning methods are usually based on the assumption that the data generation mechanism does not change over time. Yet real-world applications of machine learning, including image recognition, natural language processing, speech recognition, robot control, and bioinformatics, often violate this common assumption. Dealing with non-stationarity is one of modern machine learning's greatest challenges. This book focuses on a specific non-stationary environment known as covariate shift, in which the distributions of inputs (queries) change but the conditional distribution of outputs (answers) is unchanged, and presents machine learning theory, algorithms, and applications to overcome this variety of non-stationarity. After reviewing the state-of-the-art research in the field, the authors discuss topics that include learning under covariate shift, model selection, importance estimation, and active learning. They describe such real world applications of covariate shift adaption as brain-computer interface, speaker identification, and age prediction from facial images. With this book, they aim to encourage future research in machine learning, statistics, and engineering that strives to create truly autonomous learning machines able to learn under non-stationarity.

Introduction to Bioinformatics

Author : Arthur Lesk
Publisher :
ISBN 13 : 0198794142
Total Pages : 433 pages
Book Rating : 4.1/5 (987 download)

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Book Synopsis Introduction to Bioinformatics by : Arthur Lesk

Download or read book Introduction to Bioinformatics written by Arthur Lesk and published by . This book was released on 2019-05 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: The ideal text for biology students encountering bioinformatics for the first time, Introduction to Bioinformatics describes how recent technological advances in the field can be used as a powerful set of tools for receiving and analyzing biological data.

Kernel-based Data Fusion for Machine Learning

Author : Shi Yu
Publisher : Springer
ISBN 13 : 3642194060
Total Pages : 223 pages
Book Rating : 4.6/5 (421 download)

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Book Synopsis Kernel-based Data Fusion for Machine Learning by : Shi Yu

Download or read book Kernel-based Data Fusion for Machine Learning written by Shi Yu and published by Springer. This book was released on 2011-03-29 with total page 223 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data fusion problems arise frequently in many different fields. This book provides a specific introduction to data fusion problems using support vector machines. In the first part, this book begins with a brief survey of additive models and Rayleigh quotient objectives in machine learning, and then introduces kernel fusion as the additive expansion of support vector machines in the dual problem. The second part presents several novel kernel fusion algorithms and some real applications in supervised and unsupervised learning. The last part of the book substantiates the value of the proposed theories and algorithms in MerKator, an open software to identify disease relevant genes based on the integration of heterogeneous genomic data sources in multiple species. The topics presented in this book are meant for researchers or students who use support vector machines. Several topics addressed in the book may also be interesting to computational biologists who want to tackle data fusion challenges in real applications. The background required of the reader is a good knowledge of data mining, machine learning and linear algebra.

Machine Learning in Biological Sciences

Author : Shyamasree Ghosh
Publisher : Springer Nature
ISBN 13 : 9811688818
Total Pages : 337 pages
Book Rating : 4.8/5 (116 download)

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Book Synopsis Machine Learning in Biological Sciences by : Shyamasree Ghosh

Download or read book Machine Learning in Biological Sciences written by Shyamasree Ghosh and published by Springer Nature. This book was released on 2022-05-04 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gives an overview of applications of Machine Learning (ML) in diverse fields of biological sciences, including healthcare, animal sciences, agriculture, and plant sciences. Machine learning has major applications in process modelling, computer vision, signal processing, speech recognition, and language understanding and processing and life, and health sciences. It is increasingly used in understanding DNA patterns and in precision medicine. This book is divided into eight major sections, each containing chapters that describe the application of ML in a certain field. The book begins by giving an introduction to ML and the various ML methods. It then covers interesting and timely aspects such as applications in genetics, cell biology, the study of plant-pathogen interactions, and animal behavior. The book discusses computational methods for toxicity prediction of environmental chemicals and drugs, which forms a major domain of research in the field of biology. It is of relevance to post-graduate students and researchers interested in exploring the interdisciplinary areas of use of machine learning and deep learning in life sciences.

Deep Learning

Author : Ian Goodfellow
Publisher : MIT Press
ISBN 13 : 0262337371
Total Pages : 801 pages
Book Rating : 4.2/5 (623 download)

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Book Synopsis Deep Learning by : Ian Goodfellow

Download or read book Deep Learning written by Ian Goodfellow and published by MIT Press. This book was released on 2016-11-10 with total page 801 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to a broad range of topics in deep learning, covering mathematical and conceptual background, deep learning techniques used in industry, and research perspectives. “Written by three experts in the field, Deep Learning is the only comprehensive book on the subject.” —Elon Musk, cochair of OpenAI; cofounder and CEO of Tesla and SpaceX Deep learning is a form of machine learning that enables computers to learn from experience and understand the world in terms of a hierarchy of concepts. Because the computer gathers knowledge from experience, there is no need for a human computer operator to formally specify all the knowledge that the computer needs. The hierarchy of concepts allows the computer to learn complicated concepts by building them out of simpler ones; a graph of these hierarchies would be many layers deep. This book introduces a broad range of topics in deep learning. The text offers mathematical and conceptual background, covering relevant concepts in linear algebra, probability theory and information theory, numerical computation, and machine learning. It describes deep learning techniques used by practitioners in industry, including deep feedforward networks, regularization, optimization algorithms, convolutional networks, sequence modeling, and practical methodology; and it surveys such applications as natural language processing, speech recognition, computer vision, online recommendation systems, bioinformatics, and videogames. Finally, the book offers research perspectives, covering such theoretical topics as linear factor models, autoencoders, representation learning, structured probabilistic models, Monte Carlo methods, the partition function, approximate inference, and deep generative models. Deep Learning can be used by undergraduate or graduate students planning careers in either industry or research, and by software engineers who want to begin using deep learning in their products or platforms. A website offers supplementary material for both readers and instructors.

Data Mining in Bioinformatics

Author : Jason T. L. Wang
Publisher : Springer Science & Business Media
ISBN 13 : 1846280591
Total Pages : 337 pages
Book Rating : 4.8/5 (462 download)

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Book Synopsis Data Mining in Bioinformatics by : Jason T. L. Wang

Download or read book Data Mining in Bioinformatics written by Jason T. L. Wang and published by Springer Science & Business Media. This book was released on 2005-09-02 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written especially for computer scientists, all necessary biology is explained. Presents new techniques on gene expression data mining, gene mapping for disease detection, and phylogenetic knowledge discovery.

Understanding Machine Learning

Author : Shai Shalev-Shwartz
Publisher : Cambridge University Press
ISBN 13 : 1107057132
Total Pages : 415 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Understanding Machine Learning by : Shai Shalev-Shwartz

Download or read book Understanding Machine Learning written by Shai Shalev-Shwartz and published by Cambridge University Press. This book was released on 2014-05-19 with total page 415 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduces machine learning and its algorithmic paradigms, explaining the principles behind automated learning approaches and the considerations underlying their usage.

An Introduction to Machine Learning

Author : Gopinath Rebala
Publisher : Springer
ISBN 13 : 3030157296
Total Pages : 263 pages
Book Rating : 4.0/5 (31 download)

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Book Synopsis An Introduction to Machine Learning by : Gopinath Rebala

Download or read book An Introduction to Machine Learning written by Gopinath Rebala and published by Springer. This book was released on 2019-05-07 with total page 263 pages. Available in PDF, EPUB and Kindle. Book excerpt: Just like electricity, Machine Learning will revolutionize our life in many ways – some of which are not even conceivable today. This book provides a thorough conceptual understanding of Machine Learning techniques and algorithms. Many of the mathematical concepts are explained in an intuitive manner. The book starts with an overview of machine learning and the underlying Mathematical and Statistical concepts before moving onto machine learning topics. It gradually builds up the depth, covering many of the present day machine learning algorithms, ending in Deep Learning and Reinforcement Learning algorithms. The book also covers some of the popular Machine Learning applications. The material in this book is agnostic to any specific programming language or hardware so that readers can try these concepts on whichever platforms they are already familiar with. Offers a comprehensive introduction to Machine Learning, while not assuming any prior knowledge of the topic; Provides a complete overview of available techniques and algorithms in conceptual terms, covering various application domains of machine learning; Not tied to any specific software language or hardware implementation.