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Introduction To Computational Neurobiology And Clustering
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Book Synopsis Introduction to Computational Neurobiology and Clustering by : Brunello Tirozzi
Download or read book Introduction to Computational Neurobiology and Clustering written by Brunello Tirozzi and published by World Scientific. This book was released on 2007 with total page 242 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides students with the necessary tools to better understand the fields of neurobiological modeling, cluster analysis of proteins and genes. The theory is explained starting from the beginning and in the most elementary terms, there are many exercises solved and not useful for the understanding of the theory. The exercises are specially adapted for training and many useful Matlab programs are included, easily understood and generalizable to more complex situations. This self-contained text is particularly suitable for an undergraduate course of biology and biotechnology. New results are also provided for researchers such as the description and applications of the Kohonen neural networks to gene classification and protein classification with back propagation neutral networks.
Book Synopsis Machine Learning for Neuroscience by : Chuck Easttom
Download or read book Machine Learning for Neuroscience written by Chuck Easttom and published by CRC Press. This book was released on 2023-07-31 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book addresses the growing need for machine learning and data mining in neuroscience. The book offers a basic overview of the neuroscience, machine learning and the required math and programming necessary to develop reliable working models. The material is presented in a easy to follow user-friendly manner and is replete with fully working machine learning code. Machine Learning for Neuroscience: A Systematic Approach, tackles the needs of neuroscience researchers and practitioners that have very little training relevant to machine learning. The first section of the book provides an overview of necessary topics in order to delve into machine learning, including basic linear algebra and Python programming. The second section provides an overview of neuroscience and is directed to the computer science oriented readers. The section covers neuroanatomy and physiology, cellular neuroscience, neurological disorders and computational neuroscience. The third section of the book then delves into how to apply machine learning and data mining to neuroscience and provides coverage of artificial neural networks (ANN), clustering, and anomaly detection. The book contains fully working code examples with downloadable working code. It also contains lab assignments and quizzes, making it appropriate for use as a textbook. The primary audience is neuroscience researchers who need to delve into machine learning, programmers assigned neuroscience related machine learning projects and students studying methods in computational neuroscience.
Book Synopsis Advanced Data Analysis in Neuroscience by : Daniel Durstewitz
Download or read book Advanced Data Analysis in Neuroscience written by Daniel Durstewitz and published by Springer. This book was released on 2017-09-15 with total page 308 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is intended for use in advanced graduate courses in statistics / machine learning, as well as for all experimental neuroscientists seeking to understand statistical methods at a deeper level, and theoretical neuroscientists with a limited background in statistics. It reviews almost all areas of applied statistics, from basic statistical estimation and test theory, linear and nonlinear approaches for regression and classification, to model selection and methods for dimensionality reduction, density estimation and unsupervised clustering. Its focus, however, is linear and nonlinear time series analysis from a dynamical systems perspective, based on which it aims to convey an understanding also of the dynamical mechanisms that could have generated observed time series. Further, it integrates computational modeling of behavioral and neural dynamics with statistical estimation and hypothesis testing. This way computational models in neuroscience are not only explanatory frameworks, but become powerful, quantitative data-analytical tools in themselves that enable researchers to look beyond the data surface and unravel underlying mechanisms. Interactive examples of most methods are provided through a package of MatLab routines, encouraging a playful approach to the subject, and providing readers with a better feel for the practical aspects of the methods covered. "Computational neuroscience is essential for integrating and providing a basis for understanding the myriads of remarkable laboratory data on nervous system functions. Daniel Durstewitz has excellently covered the breadth of computational neuroscience from statistical interpretations of data to biophysically based modeling of the neurobiological sources of those data. His presentation is clear, pedagogically sound, and readily useable by experts and beginners alike. It is a pleasure to recommend this very well crafted discussion to experimental neuroscientists as well as mathematically well versed Physicists. The book acts as a window to the issues, to the questions, and to the tools for finding the answers to interesting inquiries about brains and how they function." Henry D. I. Abarbanel Physics and Scripps Institution of Oceanography, University of California, San Diego “This book delivers a clear and thorough introduction to sophisticated analysis approaches useful in computational neuroscience. The models described and the examples provided will help readers develop critical intuitions into what the methods reveal about data. The overall approach of the book reflects the extensive experience Prof. Durstewitz has developed as a leading practitioner of computational neuroscience. “ Bruno B. Averbeck
Book Synopsis Computational Explorations in Cognitive Neuroscience by : Randall C. O'Reilly
Download or read book Computational Explorations in Cognitive Neuroscience written by Randall C. O'Reilly and published by MIT Press. This book was released on 2000-08-28 with total page 540 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text, based on a course taught by Randall O'Reilly and Yuko Munakata over the past several years, provides an in-depth introduction to the main ideas in the computational cognitive neuroscience. The goal of computational cognitive neuroscience is to understand how the brain embodies the mind by using biologically based computational models comprising networks of neuronlike units. This text, based on a course taught by Randall O'Reilly and Yuko Munakata over the past several years, provides an in-depth introduction to the main ideas in the field. The neural units in the simulations use equations based directly on the ion channels that govern the behavior of real neurons, and the neural networks incorporate anatomical and physiological properties of the neocortex. Thus the text provides the student with knowledge of the basic biology of the brain as well as the computational skills needed to simulate large-scale cognitive phenomena. The text consists of two parts. The first part covers basic neural computation mechanisms: individual neurons, neural networks, and learning mechanisms. The second part covers large-scale brain area organization and cognitive phenomena: perception and attention, memory, language, and higher-level cognition. The second part is relatively self-contained and can be used separately for mechanistically oriented cognitive neuroscience courses. Integrated throughout the text are more than forty different simulation models, many of them full-scale research-grade models, with friendly interfaces and accompanying exercises. The simulation software (PDP++, available for all major platforms) and simulations can be downloaded free of charge from the Web. Exercise solutions are available, and the text includes full information on the software.
Book Synopsis Lectures in Supercomputational Neuroscience by : Peter Graben
Download or read book Lectures in Supercomputational Neuroscience written by Peter Graben and published by Springer. This book was released on 2007-10-19 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written from the physicist’s perspective, this book introduces computational neuroscience with in-depth contributions by system neuroscientists. The authors set forth a conceptual model for complex networks of neurons that incorporates important features of the brain. The computational implementation on supercomputers, discussed in detail, enables you to adapt the algorithm for your own research. Worked-out examples of applications are provided.
Book Synopsis Data-Driven Computational Neuroscience by : Concha Bielza
Download or read book Data-Driven Computational Neuroscience written by Concha Bielza and published by Cambridge University Press. This book was released on 2020-11-26 with total page 734 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data-driven computational neuroscience facilitates the transformation of data into insights into the structure and functions of the brain. This introduction for researchers and graduate students is the first in-depth, comprehensive treatment of statistical and machine learning methods for neuroscience. The methods are demonstrated through case studies of real problems to empower readers to build their own solutions. The book covers a wide variety of methods, including supervised classification with non-probabilistic models (nearest-neighbors, classification trees, rule induction, artificial neural networks and support vector machines) and probabilistic models (discriminant analysis, logistic regression and Bayesian network classifiers), meta-classifiers, multi-dimensional classifiers and feature subset selection methods. Other parts of the book are devoted to association discovery with probabilistic graphical models (Bayesian networks and Markov networks) and spatial statistics with point processes (complete spatial randomness and cluster, regular and Gibbs processes). Cellular, structural, functional, medical and behavioral neuroscience levels are considered.
Book Synopsis An Introductory Course in Computational Neuroscience by : Paul Miller
Download or read book An Introductory Course in Computational Neuroscience written by Paul Miller and published by MIT Press. This book was released on 2018-10-09 with total page 405 pages. Available in PDF, EPUB and Kindle. Book excerpt: A textbook for students with limited background in mathematics and computer coding, emphasizing computer tutorials that guide readers in producing models of neural behavior. This introductory text teaches students to understand, simulate, and analyze the complex behaviors of individual neurons and brain circuits. It is built around computer tutorials that guide students in producing models of neural behavior, with the associated Matlab code freely available online. From these models students learn how individual neurons function and how, when connected, neurons cooperate in a circuit. The book demonstrates through simulated models how oscillations, multistability, post-stimulus rebounds, and chaos can arise within either single neurons or circuits, and it explores their roles in the brain. The book first presents essential background in neuroscience, physics, mathematics, and Matlab, with explanations illustrated by many example problems. Subsequent chapters cover the neuron and spike production; single spike trains and the underlying cognitive processes; conductance-based models; the simulation of synaptic connections; firing-rate models of large-scale circuit operation; dynamical systems and their components; synaptic plasticity; and techniques for analysis of neuron population datasets, including principal components analysis, hidden Markov modeling, and Bayesian decoding. Accessible to undergraduates in life sciences with limited background in mathematics and computer coding, the book can be used in a “flipped” or “inverted” teaching approach, with class time devoted to hands-on work on the computer tutorials. It can also be a resource for graduate students in the life sciences who wish to gain computing skills and a deeper knowledge of neural function and neural circuits.
Book Synopsis Introducing Computation to Neuroscience by : Ad Aertsen
Download or read book Introducing Computation to Neuroscience written by Ad Aertsen and published by Springer Nature. This book was released on 2022-11-10 with total page 555 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book brings together a selection of papers by George Gerstein, representing his long-term endeavor of making neuroscience into a more rigorous science inspired by physics, where he had his roots. Professor Gerstein was many years ahead of the field, consistently striving for quantitative analyses, mechanistic models, and conceptual clarity. In doing so, he pioneered Computational Neuroscience, many years before the term itself was born. The overarching goal of George Gerstein’s research was to understand the functional organization of neuronal networks in the brain. The editors of this book have compiled a selection of George Gerstein’s many seminal contributions to neuroscience--be they experimental, theoretical or computational--into a single, comprehensive volume .The aim is to provide readers with a fresh introduction of these various concepts in the original literature. The volume is organized in a series of chapters by subject, ordered in time, each one containing one or more of George Gerstein’s papers.
Book Synopsis Computational Cultural Neuroscience by : Joan Y. Chiao
Download or read book Computational Cultural Neuroscience written by Joan Y. Chiao and published by Taylor & Francis. This book was released on 2024-08-02 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides novel insights into the study of empirical computational approaches in the field of cultural neuroscience. It discusses and analyses topics such as cultural intelligence, cultural machine learning, cultural brain dynamics and cultural security. This comprehensive text engages with computational principles to guide the research on the influence of cultural environments on human genetics. It explores the theoretical and methodological approaches involved in computational neuroscience. The author elucidates how cultural processes intersect with the structural organization of the nervous system, contributing to the study of computational principles and neural information-processing mechanisms at the cultural level. Research in this subject area can help provide better understanding of the role of computation in cultural neuroscience, stimulating further research into practice and policy. Computational Cultural Neuroscience: An Introduction is the ideal resource for academics, researchers and students of psychology, neuroscience, computer science or philosophy, who are interested in cultural neuroscience.
Book Synopsis Space-Time Computing with Temporal Neural Networks by : James E. Smith
Download or read book Space-Time Computing with Temporal Neural Networks written by James E. Smith and published by Morgan & Claypool Publishers. This book was released on 2017-05-18 with total page 245 pages. Available in PDF, EPUB and Kindle. Book excerpt: Understanding and implementing the brain's computational paradigm is the one true grand challenge facing computer researchers. Not only are the brain's computational capabilities far beyond those of conventional computers, its energy efficiency is truly remarkable. This book, written from the perspective of a computer designer and targeted at computer researchers, is intended to give both background and lay out a course of action for studying the brain's computational paradigm. It contains a mix of concepts and ideas drawn from computational neuroscience, combined with those of the author. As background, relevant biological features are described in terms of their computational and communication properties. The brain's neocortex is constructed of massively interconnected neurons that compute and communicate via voltage spikes, and a strong argument can be made that precise spike timing is an essential element of the paradigm. Drawing from the biological features, a mathematics-based computational paradigm is constructed. The key feature is spiking neurons that perform communication and processing in space-time, with emphasis on time. In these paradigms, time is used as a freely available resource for both communication and computation. Neuron models are first discussed in general, and one is chosen for detailed development. Using the model, single-neuron computation is first explored. Neuron inputs are encoded as spike patterns, and the neuron is trained to identify input pattern similarities. Individual neurons are building blocks for constructing larger ensembles, referred to as "columns". These columns are trained in an unsupervised manner and operate collectively to perform the basic cognitive function of pattern clustering. Similar input patterns are mapped to a much smaller set of similar output patterns, thereby dividing the input patterns into identifiable clusters. Larger cognitive systems are formed by combining columns into a hierarchical architecture. These higher level architectures are the subject of ongoing study, and progress to date is described in detail in later chapters. Simulation plays a major role in model development, and the simulation infrastructure developed by the author is described.
Book Synopsis Statistical Signal Processing for Neuroscience and Neurotechnology by : Karim G. Oweiss
Download or read book Statistical Signal Processing for Neuroscience and Neurotechnology written by Karim G. Oweiss and published by Academic Press. This book was released on 2010-09-22 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a uniquely comprehensive reference that summarizes the state of the art of signal processing theory and techniques for solving emerging problems in neuroscience, and which clearly presents new theory, algorithms, software and hardware tools that are specifically tailored to the nature of the neurobiological environment. It gives a broad overview of the basic principles, theories and methods in statistical signal processing for basic and applied neuroscience problems.Written by experts in the field, the book is an ideal reference for researchers working in the field of neural engineering, neural interface, computational neuroscience, neuroinformatics, neuropsychology and neural physiology. By giving a broad overview of the basic principles, theories and methods, it is also an ideal introduction to statistical signal processing in neuroscience. A comprehensive overview of the specific problems in neuroscience that require application of existing and development of new theory, techniques, and technology by the signal processing community Contains state-of-the-art signal processing, information theory, and machine learning algorithms and techniques for neuroscience research Presents quantitative and information-driven science that has been, or can be, applied to basic and translational neuroscience problems
Download or read book Computational Neuroscience written by and published by Academic Press. This book was released on 2014-02-18 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: Progress in Molecular Biology and Translational Science provides a forum for discussion of new discoveries, approaches, and ideas in molecular biology. It contains contributions from leaders in their fields and abundant references. This volume brings together different aspects of, and approaches to, molecular and multi-scale modeling, with applications to a diverse range of neurological diseases. Mathematical and computational modeling offers a powerful approach for examining the interaction between molecular pathways and ionic channels in producing neuron electrical activity. It is well accepted that non-linear interactions among diverse ionic channels can produce unexpected neuron behavior and hinder a deep understanding of how ion channel mutations bring about abnormal behavior and disease. Interactions with the diverse signaling pathways activated by G protein coupled receptors or calcium influx adds an additional level of complexity. Modeling is an approach to integrate myriad data sources into a cohesive and quantitative model in order to evaluate hypotheses about neuron function. In particular, a validated model developed using in vitro data allows simulations of the response to in vivo like spatio-temporal patterns of synaptic input. Incorporating molecular signaling pathways into an electrical model, allows a greater range of models to be developed, ones that can predict the response to pharmaceuticals, many of which target neuromodulator pathways. Contributions from leading authorities Informs and updates on all the latest developments in the field
Book Synopsis Fundamentals of Computational Neuroscience by : Thomas Trappenberg
Download or read book Fundamentals of Computational Neuroscience written by Thomas Trappenberg and published by Oxford University Press. This book was released on 2023-03-08 with total page 411 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational neuroscience is the theoretical study of the brain to uncover the principles and mechanisms that guide the development, organization, information processing, and mental functions of the nervous system. Although not a new area, it is only recently that enough knowledge has been gathered to establish computational neuroscience as a scientific discipline in its own right. Given the complexity of the field, and its increasing importance in progressing our understanding of how the brain works, there has long been a need for an introductory text on what is often assumed to be an impenetrable topic. The new edition of Fundamentals of Computational Neuroscience build on the success and strengths of the previous editions. It introduces the theoretical foundations of neuroscience with a focus on the nature of information processing in the brain. The book covers the introduction and motivation of simplified models of neurons that are suitable for exploring information processing in large brain-like networks. Additionally, it introduces several fundamental network architectures and discusses their relevance for information processing in the brain, giving some examples of models of higher-order cognitive functions to demonstrate the advanced insight that can be gained with such studies. Each chapter starts by introducing its topic with experimental facts and conceptual questions related to the study of brain function. An additional feature is the inclusion of simple Matlab programs that can be used to explore many of the mechanisms explained in the book. An accompanying webpage includes programs for download. The book will be the essential text for anyone in the brain sciences who wants to get to grips with this topic.
Book Synopsis Introduction to Computational Neuroscience by : Madison White
Download or read book Introduction to Computational Neuroscience written by Madison White and published by Willford Press. This book was released on 2021-11-16 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: The branch of neuroscience that uses theoretical analysis, mathematical models and abstractions of the brain for understanding the nervous system is known as computational neuroscience. It is involved in studying the development, structure, physiology and cognitive abilities of the nervous system. The models within this field seek to capture the essential features of the biological system at multi-spatial temporal scales. These models are used to develop hypotheses which can be tested through biological or psychological experiments. The major topics that are studied under computational neuroscience are single-neuron modeling, sensory processing, motor control, computational clinical neuroscience, cognition, discrimination and learning, memory, and synaptic plasticity. This book outlines the processes and applications of computational neuroscience in detail. The various studies that are constantly contributing towards advancing technologies and evolution of this field are examined in detail. This book will provide comprehensive knowledge to the readers.
Book Synopsis Computational Models for Neuroscience by : Robert Hecht-Nielsen
Download or read book Computational Models for Neuroscience written by Robert Hecht-Nielsen and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Formal study of neuroscience (broadly defined) has been underway for millennia. For example, writing 2,350 years ago, Aristotle! asserted that association - of which he defined three specific varieties - lies at the center of human cognition. Over the past two centuries, the simultaneous rapid advancements of technology and (conse quently) per capita economic output have fueled an exponentially increasing effort in neuroscience research. Today, thanks to the accumulated efforts of hundreds of thousands of scientists, we possess an enormous body of knowledge about the mind and brain. Unfortunately, much of this knowledge is in the form of isolated factoids. In terms of "big picture" understanding, surprisingly little progress has been made since Aristotle. In some arenas we have probably suffered negative progress because certain neuroscience and neurophilosophy precepts have clouded our self-knowledge; causing us to become largely oblivious to some of the most profound and fundamental aspects of our nature (such as the highly distinctive propensity of all higher mammals to automatically seg ment all aspects of the world into distinct holistic objects and the massive reorganiza tion of large portions of our brains that ensues when we encounter completely new environments and life situations). At this epoch, neuroscience is like a huge collection of small, jagged, jigsaw puz zle pieces piled in a mound in a large warehouse (with neuroscientists going in and tossing more pieces onto the mound every month).
Book Synopsis The Rewiring Brain by : Arjen van Ooyen
Download or read book The Rewiring Brain written by Arjen van Ooyen and published by Academic Press. This book was released on 2017-06-23 with total page 586 pages. Available in PDF, EPUB and Kindle. Book excerpt: The adult brain is not as hard-wired as traditionally thought. By modifying their small- or large-scale morphology, neurons can make new synaptic connections or break existing ones (structural plasticity). Structural changes accompany memory formation and learning, and are induced by neurogenesis, neurodegeneration and brain injury such as stroke. Exploring the role of structural plasticity in the brain can be greatly assisted by mathematical and computational models, as they enable us to bridge the gap between system-level dynamics and lower level cellular and molecular processes. However, most traditional neural network models have fixed neuronal morphologies and a static connectivity pattern, with plasticity merely arising from changes in the strength of existing synapses (synaptic plasticity). In The Rewiring Brain, the editors bring together for the first time contemporary modeling studies that investigate the implications of structural plasticity for brain function and pathology. Starting with an experimental background on structural plasticity in the adult brain, the book covers computational studies on homeostatic structural plasticity, the impact of structural plasticity on cognition and cortical connectivity, the interaction between synaptic and structural plasticity, neurogenesis-related structural plasticity, and structural plasticity in neurological disorders. Structural plasticity adds a whole new dimension to brain plasticity, and The Rewiring Brain shows how computational approaches may help to gain a better understanding of the full adaptive potential of the adult brain. The book is written for both computational and experimental neuroscientists. Reviews the current state of knowledge of structural plasticity in the adult brain Gives a comprehensive overview of computational studies on structural plasticity Provides insights into the potential driving forces of structural plasticity and the functional implications of structural plasticity for learning and memory Serves as inspiration for developing novel treatment strategies for stimulating functional repair after brain damage
Book Synopsis From Neuron to Cognition via Computational Neuroscience by : Michael A. Arbib
Download or read book From Neuron to Cognition via Computational Neuroscience written by Michael A. Arbib and published by MIT Press. This book was released on 2016-11-04 with total page 810 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive, integrated, and accessible textbook presenting core neuroscientific topics from a computational perspective, tracing a path from cells and circuits to behavior and cognition. This textbook presents a wide range of subjects in neuroscience from a computational perspective. It offers a comprehensive, integrated introduction to core topics, using computational tools to trace a path from neurons and circuits to behavior and cognition. Moreover, the chapters show how computational neuroscience—methods for modeling the causal interactions underlying neural systems—complements empirical research in advancing the understanding of brain and behavior. The chapters—all by leaders in the field, and carefully integrated by the editors—cover such subjects as action and motor control; neuroplasticity, neuromodulation, and reinforcement learning; vision; and language—the core of human cognition. The book can be used for advanced undergraduate or graduate level courses. It presents all necessary background in neuroscience beyond basic facts about neurons and synapses and general ideas about the structure and function of the human brain. Students should be familiar with differential equations and probability theory, and be able to pick up the basics of programming in MATLAB and/or Python. Slides, exercises, and other ancillary materials are freely available online, and many of the models described in the chapters are documented in the brain operation database, BODB (which is also described in a book chapter). Contributors Michael A. Arbib, Joseph Ayers, James Bednar, Andrej Bicanski, James J. Bonaiuto, Nicolas Brunel, Jean-Marie Cabelguen, Carmen Canavier, Angelo Cangelosi, Richard P. Cooper, Carlos R. Cortes, Nathaniel Daw, Paul Dean, Peter Ford Dominey, Pierre Enel, Jean-Marc Fellous, Stefano Fusi, Wulfram Gerstner, Frank Grasso, Jacqueline A. Griego, Ziad M. Hafed, Michael E. Hasselmo, Auke Ijspeert, Stephanie Jones, Daniel Kersten, Jeremie Knuesel, Owen Lewis, William W. Lytton, Tomaso Poggio, John Porrill, Tony J. Prescott, John Rinzel, Edmund Rolls, Jonathan Rubin, Nicolas Schweighofer, Mohamed A. Sherif, Malle A. Tagamets, Paul F. M. J. Verschure, Nathan Vierling-Claasen, Xiao-Jing Wang, Christopher Williams, Ransom Winder, Alan L. Yuille
