Genomics And Transcriptomics Of The Greater Duckweed Spirodela Polyrhiza A Model For Aquatic Biology

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Genomics and Transcriptomics of the Greater Duckweed, Spirodela Polyrhiza, a Model for Aquatic Biology

Author : Wenqin Wang
Publisher :
ISBN 13 :
Total Pages : 349 pages
Book Rating : 4.:/5 (872 download)

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Book Synopsis Genomics and Transcriptomics of the Greater Duckweed, Spirodela Polyrhiza, a Model for Aquatic Biology by : Wenqin Wang

Download or read book Genomics and Transcriptomics of the Greater Duckweed, Spirodela Polyrhiza, a Model for Aquatic Biology written by Wenqin Wang and published by . This book was released on 2014 with total page 349 pages. Available in PDF, EPUB and Kindle. Book excerpt: My thesis provides the first whole genome analysis of an aquatic plant, Spirodela polyrhiza and a reference genome for a new order among the monocotelydonous angiosperms. The Lemnoideae belong to the order of the Alismatales and are commonly known as duckweeds, the smallest, fastest growing, and simplest of aquatic plants, thus telling them apart is not a trivial task. Whereas a simple and accessible protocol has been established for land plants by the Consortium for the Barcode of Life with seven universal DNA barcoding markers, we found that atpF-atpH noncoding spacer is the most promising marker for duckweed species-level identification. Furthermore, our assembly and annotation of the Spirodela chloroplast and mitochondrial genomes open an opportunity of population-level classification. A key to our understanding of the evolution of a species and its potential use is the gene content of the organism. Therefore, we sequenced Spirodela polyrhiza 7498 that has one of the smallest genomes with 158 Mb within this subfamily of species. The genome contains 19,623 predicted protein-coding genes, sharing a total of 8,255 common gene families with Arabidopsis, tomato, banana, and rice despite a significantly reduced gene number. Reduced gene families and missing genes reflect changes consistent with its compact and reduced morphogenesis or forever-young life style, aquatic suspension, and suppression of juvenile-to-adult transition. Spirodela exhibits a remarkable phenotypic plasticity to adapt to cold weather in winter. We identified and functionally annotated 362 differentially expressed genes, which open a major step towards understanding the molecular network underlying vegetative frond dormancy. Moreover, the expression data for lipid and starch biosynthesis together with the turion-specific transcriptional genes from our RNA-Seq data could be ideal targets to develop duckweeds into oil crops. Thanks to its unique and fascinating biology, applications of duckweed in water remediation and as a renewable energy source are predicted to have a bright future. The genome sequence of Spirodela provides the first step to identify, understand, and improve relevant traits for specific target applications.

The Duckweed Genomes

Author : Xuan Hieu Cao
Publisher :
ISBN 13 : 9783030110468
Total Pages : 185 pages
Book Rating : 4.1/5 (14 download)

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Book Synopsis The Duckweed Genomes by : Xuan Hieu Cao

Download or read book The Duckweed Genomes written by Xuan Hieu Cao and published by . This book was released on 2020 with total page 185 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book tells the story behind the first Spirodela genome sequencing project. Further, it describes the current genomics applications of these findings, and efforts to sequence new genomes within the family. The closing chapters address the sequencing of the over 1 Gigabase Wolffia genomes, which could have major impacts on genome evolution and agricultural research. The duckweed or Lemnaceae family is a collection of 5 genera and 37 species of the smallest, fastest-growing flowering plants. Many of these aquatic monocotyledonous plants can grow all over the world, in a variety of climates. Given their simplified and neotenous morphology, duckweeds have been researched for several decades as a model species for plant physiology and ecotoxicological research, contributing to our understanding e.g. of flowering response, plant circadian systems, sulfur assimilation pathways and auxin biosynthesis. In addition, duckweed-based treatment has been a favorite and feasible means, especially in developing countries, of removing phosphorus and pharmaceutical chemicals from sewage and wastewater. With a dry annual mass yield per hectare of up to 80 tonnes (equivalent to 10 tonnes of protein), duckweed is also a promising aquatic crop in new modern and sustainable agriculture. Besides being an excellent primary or supplemental feedstock for the production of livestock and fish, duckweed biomass can be utilized as a potential resource for human nutrition, biofuel, or bioplastics, depending on water quality as well as protein or starch accumulating procedures. These academic and commercial interests have led to international efforts to sequence the Spirodela polyrhiza genome, the smallest and most ancient genome in the family.

Aquatic Genomics

Author : N. Shimizu
Publisher : Springer Science & Business Media
ISBN 13 : 4431659382
Total Pages : 448 pages
Book Rating : 4.4/5 (316 download)

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Book Synopsis Aquatic Genomics by : N. Shimizu

Download or read book Aquatic Genomics written by N. Shimizu and published by Springer Science & Business Media. This book was released on 2013-11-11 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: In a scientific pursuit there is continual food for discovery and wonder. M. Shelley (1818) Genomic analysis of aquatic species has long been overshadowed by the superb activity of the human genome project. However, aquatic genomics is now in the limelight as evidenced by the recent accomplishment of fugu genome sequencing, which provided a significant foundation for comparative fish genomics. Undoubt edly, such progress will provide an exciting and unparalleled boost to our knowl edge of the genetics of aquatic species. Thus, aquatic genomics research has become a promising new research field with an impact on the fishery industry. It is notewor thy that the Food and Agriculture Organization (FAO) of the United Nations has projected that current global fisheries production will soon become insufficient to supply the increasing world population and that aquaculture has a great potential to fulfill that demand. This book, Aquatic Genomic. ~: Steps Toward a Great Future, was designed as a collection of advanced knowledge in aquatic genomics and biological sciences. It covers a variety of aquatic organisms including fish, crustaceans, and shellfish, and describes various advanced methodologies, including genome analysis, gene map ping, DNA markers, and EST analysis. Also included are discussions of many sub jects such as regulation of gene expression, stress and immune responses, sex differ entiation, hormonal control, and transgenic fishes.

Duckweed: Biological Chemistry and Applications

Author : Marvin Edelman
Publisher : Frontiers Media SA
ISBN 13 : 2889664295
Total Pages : 165 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Duckweed: Biological Chemistry and Applications by : Marvin Edelman

Download or read book Duckweed: Biological Chemistry and Applications written by Marvin Edelman and published by Frontiers Media SA. This book was released on 2021-02-03 with total page 165 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Aquatic Monocotyledons of North America

Author : Donald H. Les
Publisher : CRC Press
ISBN 13 : 1351679686
Total Pages : 666 pages
Book Rating : 4.3/5 (516 download)

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Book Synopsis Aquatic Monocotyledons of North America by : Donald H. Les

Download or read book Aquatic Monocotyledons of North America written by Donald H. Les and published by CRC Press. This book was released on 2020-05-10 with total page 666 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book brings together information on the natural history, ecology and systematics of North American aquatic monocotyledons. The book is an overview of the biology of major aquatic species by compiling information from numerous sources that lie scattered among the primary literature, herbarium databases, and other reference sources. Information on more than 300 species in 87 genera of monocotyledons will be included. Recent phylogenetic analyses will be incorporated. Although focusing specifically on North America, the cosmopolitan distribution of many aquatic plants should make this an attractive text to people working virtually anywhere outside of the region as well. Key Selling Features: The primary source of natural history information on aquatic plants Comprehensive lists of ecological associates Synthetic overview of systematic relationships of aquatic species and genera Practical information for rare and invasive plant managers Essential guide to facilitate wetland delineation

The Duckweed Genomes

Author : Xuan Hieu Cao
Publisher : Springer Nature
ISBN 13 : 3030110451
Total Pages : 185 pages
Book Rating : 4.0/5 (31 download)

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Book Synopsis The Duckweed Genomes by : Xuan Hieu Cao

Download or read book The Duckweed Genomes written by Xuan Hieu Cao and published by Springer Nature. This book was released on 2020-01-07 with total page 185 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book tells the story behind the first Spirodela genome sequencing project. Further, it describes the current genomics applications of these findings, and efforts to sequence new genomes within the family. The closing chapters address the sequencing of the over 1 Gigabase Wolffia genomes, which could have major impacts on genome evolution and agricultural research. The duckweed or Lemnaceae family is a collection of 5 genera and 37 species of the smallest, fastest-growing flowering plants. Many of these aquatic monocotyledonous plants can grow all over the world, in a variety of climates. Given their simplified and neotenous morphology, duckweeds have been researched for several decades as a model species for plant physiology and ecotoxicological research, contributing to our understanding e.g. of flowering response, plant circadian systems, sulfur assimilation pathways and auxin biosynthesis. In addition, duckweed-based treatment has been a favorite and feasible means, especially in developing countries, of removing phosphorus and pharmaceutical chemicals from sewage and wastewater. With a dry annual mass yield per hectare of up to 80 tonnes (equivalent to 10 tonnes of protein), duckweed is also a promising aquatic crop in new modern and sustainable agriculture. Besides being an excellent primary or supplemental feedstock for the production of livestock and fish, duckweed biomass can be utilized as a potential resource for human nutrition, biofuel, or bioplastics, depending on water quality as well as protein or starch accumulating procedures. These academic and commercial interests have led to international efforts to sequence the Spirodela polyrhiza genome, the smallest and most ancient genome in the family.

Plant Comparative Genomics

Author : Alejandro Pereira-Santana
Publisher : Springer Nature
ISBN 13 : 1071624296
Total Pages : 293 pages
Book Rating : 4.0/5 (716 download)

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Book Synopsis Plant Comparative Genomics by : Alejandro Pereira-Santana

Download or read book Plant Comparative Genomics written by Alejandro Pereira-Santana and published by Springer Nature. This book was released on 2022-07-11 with total page 293 pages. Available in PDF, EPUB and Kindle. Book excerpt: This detailed book presents recent methodologies for the task of inspecting the genomic world of plants, extracting valuable information, and presenting it in a readable way. With a focus on bioinformatics tools, the volume explores phylogenetics and evolution, Omics analysis, as well as experimental procedures for trait characterization. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of vital expert implementation advice that will lead to successful results. Authoritative and practical, Plant Comparative Genomics serves as an ideal resource for researchers looking to implement comparative tools in order to explore their genomic data for their daily scientific work.

Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs

Author : H. Kenneth Hudnell
Publisher : Springer Science & Business Media
ISBN 13 : 0387758658
Total Pages : 955 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs by : H. Kenneth Hudnell

Download or read book Cyanobacterial Harmful Algal Blooms: State of the Science and Research Needs written by H. Kenneth Hudnell and published by Springer Science & Business Media. This book was released on 2008-03-13 with total page 955 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the ever-increasing incidence of harmful cyanobacterial algal blooms, this monograph has added urgency and will be essential reading for all sorts of researchers, from neuroscientists to cancer research specialists. The volume contains the proceedings of the 2005 International Symposium on Cyanobacterial Harmful Algal Blooms, and has been edited by H. Kenneth Hudnell, of the US Environmental Protection Agency. It contains much of the most recent research into the subject.

Transgenic Plant Technology for Remediation of Toxic Metals and Metalloids

Author : M.N.V. Prasad
Publisher : Academic Press
ISBN 13 : 0128143908
Total Pages : 564 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Transgenic Plant Technology for Remediation of Toxic Metals and Metalloids by : M.N.V. Prasad

Download or read book Transgenic Plant Technology for Remediation of Toxic Metals and Metalloids written by M.N.V. Prasad and published by Academic Press. This book was released on 2018-11-20 with total page 564 pages. Available in PDF, EPUB and Kindle. Book excerpt: Transgenic Plant Technology for Remediation of Toxic Metals and Metalloids covers all the technical aspects of gene transfer, from molecular methods, to field performance using a wide range of plants and diverse abiotic stress factors. It describes methodologies that are well established as a key resource for researchers, as well as a tool for training technicians and students. This book is an essential reference for those in the plant sciences, forestry, agriculture, microbiology, environmental biology and plant biotechnology, and those using transgenic plant models in such areas as molecular and cell biology, developmental biology, stress physiology and phytoremediation. Provides in-depth coverage of transgenic plant technology for environmental problems Discusses background and an introduction to techniques and salient protocols using specific plants systems Includes emerging strategies for application of transgenic plans in remediation

Plant Electrophysiology

Author : Alexander G. Volkov
Publisher : Springer Science & Business Media
ISBN 13 : 354037843X
Total Pages : 513 pages
Book Rating : 4.5/5 (43 download)

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Book Synopsis Plant Electrophysiology by : Alexander G. Volkov

Download or read book Plant Electrophysiology written by Alexander G. Volkov and published by Springer Science & Business Media. This book was released on 2007-04-19 with total page 513 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book compiles new findings in plant electrophysiology from the work of internationally renowned experts in the fields of electrophysiology, bio-electrochemistry, biophysics, signal transduction, phloem transport, tropisms, ion channels, plant electrochemistry, and membrane transport. Opening with a historical introduction, the book reviews methods in plant electrophysiology, introducing such topics as measuring membrane potentials and ion fluxes, path-clamp technique, and electrochemical sensors. The coverage includes experimental results and their theoretical interpretation.

Microbial Metatranscriptomics Belowground

Author : Manoj Nath
Publisher : Springer Nature
ISBN 13 : 9811597588
Total Pages : 677 pages
Book Rating : 4.8/5 (115 download)

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Book Synopsis Microbial Metatranscriptomics Belowground by : Manoj Nath

Download or read book Microbial Metatranscriptomics Belowground written by Manoj Nath and published by Springer Nature. This book was released on 2021-06-02 with total page 677 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book emphasizes role of functional microbes in soil to improve fertility and plant health in agro-ecosystem. In this compendium main emphasis is on occurrence and distribution of microbial communities, In situ active microbial quorum in rhizosphere, metratranscriptomics for microflora- and fauna, and fnctional diversity in rhizosphere. The book also highlights the importance of PGPRs in rhizosphere, root endotrophic microbes, functional niche under biotic stress, functional niche under abiotic stress, functional root derived signals, as well as functional microbe derived signals. Approaches deployed in metatranscriptomics, and molecular Tools used in rhizosphere are also discussed in detail. The book presents content is useful for students, academicians, researchers working on soil rhizosphere and as a policy document on sustenance of agriculture.

Advances in Bioremediation and Phytoremediation for Sustainable Soil Management

Author : Junaid Ahmad Malik
Publisher : Springer Nature
ISBN 13 : 3030899845
Total Pages : 449 pages
Book Rating : 4.0/5 (38 download)

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Book Synopsis Advances in Bioremediation and Phytoremediation for Sustainable Soil Management by : Junaid Ahmad Malik

Download or read book Advances in Bioremediation and Phytoremediation for Sustainable Soil Management written by Junaid Ahmad Malik and published by Springer Nature. This book was released on 2022-01-31 with total page 449 pages. Available in PDF, EPUB and Kindle. Book excerpt: This edited volume deals with the understanding of the issues concerned with the pollution caused by toxic elements and heavy metals and their impacts on the different agro-ecosystems as well as the techniques involved in sustainable remediation and amelioration of polluted soils. Furthermore, the book is a detailed comprehensive account for the treatment technologies from unsustainable to sustainable which includes chapters prepared by professionals with expertise in environmental microbiology, biotechnology, bioremediation, and environmental engineering. It focuses on the characterization, reclamation, bioremediation, and phytoremediation of polluted soils. The research presented also highlights some of the significantly important plant and microbial species involved in remediation, the physiology, biochemistry, and the mechanisms of remediation by various plants and microbes, and suggestions for future improvement of bioremediation technology. It offers insights into the current focus and recent advances in bioremediation and green technology applications for sustainable soil management.

Duckweed Aquaculture

Author : Paul Skillicorn
Publisher : World Bank Publications
ISBN 13 :
Total Pages : 92 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Duckweed Aquaculture by : Paul Skillicorn

Download or read book Duckweed Aquaculture written by Paul Skillicorn and published by World Bank Publications. This book was released on 1993 with total page 92 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Advances in Molecular Breeding Toward Drought and Salt Tolerant Crops

Author : Matthew A. Jenks
Publisher : Springer Science & Business Media
ISBN 13 : 1402055773
Total Pages : 819 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Advances in Molecular Breeding Toward Drought and Salt Tolerant Crops by : Matthew A. Jenks

Download or read book Advances in Molecular Breeding Toward Drought and Salt Tolerant Crops written by Matthew A. Jenks and published by Springer Science & Business Media. This book was released on 2009-05-07 with total page 819 pages. Available in PDF, EPUB and Kindle. Book excerpt: With near-comprehensive coverage of new advances in crop breeding for drought and salinity stress tolerance, this timely work seeks to integrate the most recent findings about key biological determinants of plant stress tolerance with modern crop improvement strategies. This volume is unique because is provides exceptionally wide coverage of current knowledge and expertise being applied in drought and salt tolerance research.

Exploring Plant Cells for the Production of Compounds of Interest

Author : Sonia Malik
Publisher : Springer Nature
ISBN 13 : 303058271X
Total Pages : 353 pages
Book Rating : 4.0/5 (35 download)

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Book Synopsis Exploring Plant Cells for the Production of Compounds of Interest by : Sonia Malik

Download or read book Exploring Plant Cells for the Production of Compounds of Interest written by Sonia Malik and published by Springer Nature. This book was released on 2021-04-10 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: Natural compounds obtained from plants represent a tremendous global market due to their use as food additives, cosmetics, in agriculture and in pharmaceuticals. This book provides up-to-date information on various strategies and methods for producing compounds of interest. Leading researchers discuss the latest advances in environmentally friendly natural compound production from plants, making the book a valuable resource for biotechnologists, pharmacists, food technologists and researchers working in the medical and healthcare industries.

Approaches to the Remediation of Inorganic Pollutants

Author : Mirza Hasanuzzaman
Publisher : Springer Nature
ISBN 13 : 9811562210
Total Pages : 413 pages
Book Rating : 4.8/5 (115 download)

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Book Synopsis Approaches to the Remediation of Inorganic Pollutants by : Mirza Hasanuzzaman

Download or read book Approaches to the Remediation of Inorganic Pollutants written by Mirza Hasanuzzaman and published by Springer Nature. This book was released on 2021-02-08 with total page 413 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this comprehensive book, plant biologists and environmental scientists present the latest information on different approaches to the remediation of inorganic pollutants. Highlighting remediation techniques for a broad range of pollutants, the book offers a timely compilation to help readers understand injury and tolerance mechanisms, and the subsequent improvements that can be achieved by plant-based remediation. Gathering contributions by respected experts in the field, the book represents a valuable asset for students and researchers, particularly plant physiologists, environmental scientists, biotechnologists, botanists, soil chemists and agronomists.

Plant-Metal Interactions

Author : Sudhakar Srivastava
Publisher : Springer
ISBN 13 : 3030207323
Total Pages : 316 pages
Book Rating : 4.0/5 (32 download)

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Book Synopsis Plant-Metal Interactions by : Sudhakar Srivastava

Download or read book Plant-Metal Interactions written by Sudhakar Srivastava and published by Springer. This book was released on 2019-07-26 with total page 316 pages. Available in PDF, EPUB and Kindle. Book excerpt: Metal toxicity and deficiency are both common abiotic problems faced by plants. While metal contamination around the world is a critical issue, the bioavailability of some essential metals like zinc (Zn) and selenium (Se) can be seriously low in other locations. The list of metals spread in high concentrations in soil, water and air includes several toxic as well as essential elements, such as arsenic (As), cadmium (Cd), chromium (Cr), aluminum (Al), and selenium (Se). The problems for some metals are geographically confined, while for others, they are widespread. For instance, arsenic is an important toxic metalloid whose contamination in Southeast Asia and other parts of world is well documented. Its threats to human health via food consumption have generated immense interest in understanding plants’ responses to arsenic stress. Metals constitute crucial components of key enzymes and proteins in plants. They are important for the proper growth and development of plants. In turn, plants serve as sources of essential elements for humans and animals. Studies of their physiological effects on plants metabolism have led to the identification of crucial genes and proteins controlling metal uptake and transport, as well as the sensing and signaling of metal stresses. Plant-Metal Interactions sheds light on the latest development and research in analytical biology with respect to plant physiology. More importantly, it showcases the positive and negative impacts of metals on crop plants growth and productivity.