Genome-Wide Association Studies Combined with Genomic Selection as a Tool to Increase Fusarium Head Blight Resistance in Wheat and Its Wild Relatives

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (133 download)

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Book Synopsis Genome-Wide Association Studies Combined with Genomic Selection as a Tool to Increase Fusarium Head Blight Resistance in Wheat and Its Wild Relatives by : Sampurna Bartaula

Download or read book Genome-Wide Association Studies Combined with Genomic Selection as a Tool to Increase Fusarium Head Blight Resistance in Wheat and Its Wild Relatives written by Sampurna Bartaula and published by . This book was released on 2022 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Fusarium head blight (FHB) is a devastating wheat (Triticum aestivum L.) disease worldwide. Presently, there is insufficient FHB resistance in the Canadian wheat germplasm. Genome-wide association study (GWAS) and genomic selection (GS) can be utilized to identify sources of resistance that could benefit wheat breeding. To define the genetic architecture of FHB resistance, association panels from a spring and a winter collection were evaluated using the Wheat Illumina Infinium 90K array. A total of 206 accessions from the spring panel and 73 from the winter panel were evaluated in field trials for 3-4 years at two locations, namely Morden (Manitoba) and Ottawa (Ontario). These accessions were phenotyped for FHB incidence (INC), severity (SEV), visual rating index (VRI), and deoxynivalenol (DON) content. Significant (p

Improving Marker Assisted Selection in Soft Winter Wheat for Fusarium Head Blight Resistance with QTL Validation, Genome-Wide Association, and Genomic Selection

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ISBN 13 :
Total Pages : 203 pages
Book Rating : 4.:/5 (747 download)

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Book Synopsis Improving Marker Assisted Selection in Soft Winter Wheat for Fusarium Head Blight Resistance with QTL Validation, Genome-Wide Association, and Genomic Selection by : Jared Howell Benson

Download or read book Improving Marker Assisted Selection in Soft Winter Wheat for Fusarium Head Blight Resistance with QTL Validation, Genome-Wide Association, and Genomic Selection written by Jared Howell Benson and published by . This book was released on 2011 with total page 203 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Genomic Approaches for Mapping and Predicting Disease Resistance in Wheat (Triticum Aestivum L.)

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (12 download)

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Book Synopsis Genomic Approaches for Mapping and Predicting Disease Resistance in Wheat (Triticum Aestivum L.) by : Cristiano Lemes Da Silva

Download or read book Genomic Approaches for Mapping and Predicting Disease Resistance in Wheat (Triticum Aestivum L.) written by Cristiano Lemes Da Silva and published by . This book was released on 2018 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Wheat diseases cause significant economic losses every year. To ensure global food security, newly released cultivars must possess increased levels of broadly-effective resistance against wheat pathogens, acceptable end-use quality, and high yield potential. Genetic host resistance stands out from other management strategies as the most viable option for controlling diseases. New genotyping platforms allow whole genome marker discovery at a relatively low cost, favoring the identification of novel loci underlying traits of interest. The work presented here describes genomic approaches for mapping and predicting the resistance to Fusarium head blight (FHB) and wheat rusts. The first study used biparental mapping to identify quantitative trait loci (QTL) associated with Fusarium head blight (FHB) resistance. A doubled haploid population (DH) was originated from a cross of Everest and WB-Cedar, which are widely grown wheat cultivars in Kansas with moderately resistant and moderately susceptible reactions to FHB, respectively. We confirmed that neither of the parents carry known large-effect QTLs, suggesting that FHB resistance is native. Eight small-effect QTLs were identified as associated with multiple mechanisms of FHB resistance. All QTLs had additive effects, providing significant improvements in levels of resistance when they were found in combinations within DH lines. In the second study, a genome-wide association mapping (GWAS) and genomic selection (GS) models were applied for FHB resistance in a panel of 962 elite lines from the K-State Wheat Breeding Program. Significant single nucleotide polymorphisms (SNPs) associated with the percentage of symptomatic spikelets were identified but not reproducible across breeding panels tested in each year. Accuracy of predictions ranged from 0.25 to 0.51 depending on GS model, indicating that it can be a useful tool to increase levels of FHB resistance. GWAS and GS approaches were also applied to a historical dataset to identify loci underlying resistance to leaf and stem rust at seedling stage in a panel of elite winter wheat lines. Infection types of multiple races of wheat rusts from the last sixteen years of the Southern Regional Performance Nursery (SRPN) were used in this study. A total of 533 elite lines originating from several breeding programs were tested in the SRPN during this period of time. GWAS identified significant SNP-trait associations for wheat rusts, confirming the effectiveness of already known genes and revealing potentially novel loci associated with resistance.

Wheat Blast

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Publisher : CRC Press
ISBN 13 : 0429894074
Total Pages : 157 pages
Book Rating : 4.4/5 (298 download)

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Book Synopsis Wheat Blast by : Sudheer Kumar

Download or read book Wheat Blast written by Sudheer Kumar and published by CRC Press. This book was released on 2020-04-09 with total page 157 pages. Available in PDF, EPUB and Kindle. Book excerpt: Wheat Blast provides systematic and practical information on wheat blast pathology, summarises research progress and discusses future perspectives based on current understanding of the existing issues. The book explores advance technologies that may help in deciding the path for future research and development for better strategies and techniques to manage the wheat blast disease. It equips readers with basic and applied understanding on the identification of disease, its distribution and chances of further spread in new areas, its potential to cause yield losses to wheat, the conditions that favour disease development, disease prediction modelling, resistance breeding methods and management strategies against wheat blast. Features: Provides comprehensive information on wheat blast pathogen and its management under a single umbrella Covers disease identification and diagnostics which will be helpful to check introduction in new areas Discusses methods and protocol to study the different aspects of the disease such as diagnostics, variability, resistance screening, epiphytotic creation etc. Gives deep insight on the past, present and future outlook of wheat blast research progress This book’s chapters are contributed by experts and pioneers in their respective fields and it provides comprehensive insight with updated findings on wheat blast research. It serves as a valuable reference for researchers, policy makers, students, teachers, farmers, seed growers, traders, and other stakeholders dealing with wheat.

Genomic Prediction and Genome Wide Association Mapping for Disease Resistance in Wheat

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ISBN 13 :
Total Pages : 400 pages
Book Rating : 4.:/5 (1 download)

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Book Synopsis Genomic Prediction and Genome Wide Association Mapping for Disease Resistance in Wheat by : Philomin Juliana

Download or read book Genomic Prediction and Genome Wide Association Mapping for Disease Resistance in Wheat written by Philomin Juliana and published by . This book was released on 2017 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: Wheat (Triticum aestivum L.) is one of the major food crops in the world that is grown on more land area than any other commercial crop. The demand for wheat is expected to increase by 60% by 2050 which cannot be met with the current yield gain of 1%. Hence, it is important to evaluate different strategies for increasing the genetic gain in wheat. With this focus, we evaluated two strategies, genomic prediction and genome-wide association studies (GWAS) for disease resistance in CIMMYT’s international bread wheat screening nurseries (IBWSN). Our objective was to compare different prediction models for resistance to leaf rust (LR), stem rust (SR), stripe rust (STR), Septoria tritici blotch (STB), Stagonospora nodorum blotch (SNB) and tan spot (TS) in the 45th and 46th IBWSN entries. The prediction models tested include: Least-squares (LS), genomic-BLUP (G-BLUP), Bayesian ridge regression (BRR), Bayes A (BA), Bayes B (BB), Bayes C (BC), Bayesian least absolute shrinkage and selection operator (BL), reproducing kernel Hilbert spaces (RKHS) markers (RKHS-M), RKHS pedigree (RKHS-P) and RKHS markers and pedigree (RKHS-MP). The 333 lines in the 45th IBWSN and the 313 lines in the 46th IBWSN were genotyped using genotyping-by-sequencing markers. For the rusts, the mean prediction accuracies were 0.74 for LR seedling, 0.56 for LR APR, 0.65 for SR APR, 0.78 for YR seedling and 0.71 for YR APR. For the leaf spotting diseases, the mean genomic prediction accuracies were 0.45 for STB APR, 0.55 for SNB seedling, 0.66 for TS seedling and 0.48 for TS APR. Using genome-wide marker based models resulted in an average of 42-48% increase in accuracy over LS. Overall, the RKHS-MP model gave the highest accuracies, while LS gave the lowest. GWAS was also performed on these traits and several significant markers and candidate genes were identified. We conclude that implementing GWAS and genomic selection in breeding for these diseases would help to achieve higher accuracies and rapid gains from selection. ...

Fusarium Head Blight in Canadian Winter Wheat

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (125 download)

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Book Synopsis Fusarium Head Blight in Canadian Winter Wheat by : Harwinder Sidhu

Download or read book Fusarium Head Blight in Canadian Winter Wheat written by Harwinder Sidhu and published by . This book was released on 2020 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Fusarium Head Blight (FHB) is a devastating disease of Wheat (Triticum aestivum L.) caused primarily by Fusarium graminearum Schwabe in Canada. Wheat FHB results in yield and produce quality losses. The clearest symptoms of FHB are premature bleaching of spikelets in the field, and fusarium damaged kernels in the harvested seed. Insufficient and costly disease control strategies make breeding for FHB resistance in wheat an ideal choice. There is a lack of FHB resistance sources in the Canadian wheat germplasm and Genome Wide Association Studies (GWAS) can be utilized to identify such sources. Furthermore, as no Quantitative Trait Loci (QTL) provides absolute resistance to FHB, identification of novel sources of resistance is desired. Genomic Selection (GS) has great potential in crop improvement, specifically for quantitative traits. A diversity panel that represents the genetic diversity of the Canadian, i.e., high latitude North American winter wheat was assembled for this thesis and the genetic diversity, population structure, and linkage disequilibrium of the germplasm was studied. To identify QTL associated with FHB, a GWAS study was conducted using the phenotypic data collected at three locations over two years. For understanding the role of number of genotypic markers, population structure, and choice of model in trait prediction modelling, a GS study was conducted. The Canadian Winter Wheat Diversity Panel is a diverse collection of winter wheat capturing diversity both in time and geography from Canada. The panel comprises of seven subpopulations with different LD, allele frequencies, and genetic diversity parameters. Multiple QTL associated with FHB related traits were identified on 13 chromosomes which may harbor genes involved in plant defense and stress response mechanisms. For FHB resistance improvement, the GS study demonstrated that the modelling parameters can be determined based upon the genotypic information available. Deoxynivalenol contamination was one of the traits with the highest prediction accuracy. GS can account for minor effect QTL, which is beneficial when breeding for quantitative traits. FHB resistant varieties are needed for an effective and economical disease control strategy in wheat and GS can complement current breeding efforts to develop FHB resistant wheat varieties.

Genome-Wide Association Study for Disease Traits In Wheat and Its Wild Relatives

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (129 download)

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Book Synopsis Genome-Wide Association Study for Disease Traits In Wheat and Its Wild Relatives by : Fizza Fatima

Download or read book Genome-Wide Association Study for Disease Traits In Wheat and Its Wild Relatives written by Fizza Fatima and published by . This book was released on 2020 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Wheat is the most widely grown crop in the world and as such, is an essential source of energy and nutrition. The challenges that breeders presently face is to increase production to feed the rising population of the world, while also accounting for climate change, pollution, water and environmental stresses. As genetic uniformity of modern cultivars has increased vulnerability to pests and diseases, the wild relatives of wheat offer a rich source of genetic diversity and stress tolerance traits, that can be harnessed and transferred in to modern wheat. In this study, we used array-based genotyping to explore genetic diversity in 385 domesticated and non-domesticated lines of wheat and their wild relatives. Genetic characterization using the wheat 90K array, and subsequent filtering and validation mapped 9,570 single nucleotide polymorphic markers onto the wheat reference genome. Phylogenetic analyses illustrated four major clades, clearly separating the wild species from the domesticated, and the ancient Triticum turgidum species from modern T. turgidum cultivars. Using this diverse germplasm, a genome-wide association study (GWAS) was performed for leaf rust, the most widespread rust disease of wheat. Identification of novel sources of resistance is necessary to maintain disease resistance and stay ahead in the plant-pathogen evolutionary arms race. GWAS was conducted using eight statistical models for infection types against six leaf rust isolates and leaf rust severity rated in field trials for 3-4 years at 2-3 locations in Canada. Functional annotation of genes containing significant quantitative trait nucleotides (QTNs) identified 96 disease-related nucleotide associated with leaf rust resistance. A total of 21 QTNs were in haplotype blocks or within flanking markers of at least 16 known leaf rust (Lr) resistance genes. The remaining significant QTNs were considered loci that putatively harbor new Lr resistance genes. Future efforts to validate these loci will help understand their role in disease resistance and promote their utility for marker-assisted selection in pre-breeding.

Encyclopedia of Food Grains

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Publisher : Academic Press
ISBN 13 : 0123947863
Total Pages : 1956 pages
Book Rating : 4.1/5 (239 download)

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Book Synopsis Encyclopedia of Food Grains by : Colin W Wrigley

Download or read book Encyclopedia of Food Grains written by Colin W Wrigley and published by Academic Press. This book was released on 2015-12-17 with total page 1956 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Encyclopedia of Food Grains, Four Volume Set is an in-depth and authoritative reference covering all areas of grain science. Coverage includes everything from the genetics of grains to the commercial, economic and social aspects of this important food source. Also covered are the biology and chemistry of grains, the applied aspects of grain production and the processing of grains into various food and beverage products. With the paramount role of cereals as a global food source, this Encyclopedia is sure to become the standard reference work in the field of science. Also available online via ScienceDirect – featuring extensive browsing, searching, and internal cross-referencing between articles in the work, plus dynamic linking to journal articles and abstract databases, making navigation flexible and easy. For more information, pricing options and availability visit www.info.sciencedirect.com. Written from an international perspective the Encyclopedia concentrates on the food uses of grains, but details are also provided about the wider roles of grains Well organized and accessible, it is the ideal resource for students, researchers and professionals seeking an authoritative overview on any particular aspect of grain science This second edition has four print volumes which provides over 200 articles on food grains Includes extensive cross-referencing and "Further Reading" lists at the end of each article for deeper exploration into the topic This edition also includes useful items for students and teachers alike, with Topic Highlights, Learning objectives, Exercises for Revision and exercises to explore the topic further

Genomic Selection and Quantitative Trait Loci Mapping for Fusarium Head Blight Resistance in Wheat (Triticum Aestivum L.).

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (931 download)

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Book Synopsis Genomic Selection and Quantitative Trait Loci Mapping for Fusarium Head Blight Resistance in Wheat (Triticum Aestivum L.). by :

Download or read book Genomic Selection and Quantitative Trait Loci Mapping for Fusarium Head Blight Resistance in Wheat (Triticum Aestivum L.). written by and published by . This book was released on 2015 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Advances in Wheat Genetics: From Genome to Field

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Publisher : Springer
ISBN 13 : 4431556753
Total Pages : 421 pages
Book Rating : 4.4/5 (315 download)

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Book Synopsis Advances in Wheat Genetics: From Genome to Field by : Yasunari Ogihara

Download or read book Advances in Wheat Genetics: From Genome to Field written by Yasunari Ogihara and published by Springer. This book was released on 2015-09-15 with total page 421 pages. Available in PDF, EPUB and Kindle. Book excerpt: This proceedings is a collection of 46 selected papers that were presented at the 12th International Wheat Genetics Symposium (IWGS). Since the launch of the wheat genome sequencing project in 2005, the arrival of draft genome sequences has marked a new era in wheat genetics and genomics, catalyzing rapid advancement in the field. This book provides a comprehensive review of the forefront of wheat research, across various important topics such as germplasm and genetic diversity, cytogenetics and allopolyploid evolution, genome sequencing, structural and functional genomics, gene function and molecular biology, biotic stress, abiotic stress, grain quality, and classical and molecular breeding. Following an introduction, 9 parts of the book are dedicated to each of these topics. A final, 11th part entitled “Toward Sustainable Wheat Production” contains 7 excellent papers that were presented in the 12th IWGS Special Session supported by the OECD. With rapid population growth and radical climate changes, the world faces a global food crisis and is in need of another Green Revolution to boost yields of wheat and other widely grown staple crops. Although this book focuses on wheat, many of the newly developed techniques and results presented here can be applied to other plant species with large and complex genomes. As such, this volume is highly recommended for all students and researchers in wheat sciences and related plant sciences and for those who are interested in stable food production and food security.

Assessing Genome Wide Breeding Strategies for Economic Traits in Soft Winter Wheat and Their Impact on Genetic Architecture

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Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (95 download)

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Book Synopsis Assessing Genome Wide Breeding Strategies for Economic Traits in Soft Winter Wheat and Their Impact on Genetic Architecture by : Amber L. Hoffstetter

Download or read book Assessing Genome Wide Breeding Strategies for Economic Traits in Soft Winter Wheat and Their Impact on Genetic Architecture written by Amber L. Hoffstetter and published by . This book was released on 2015 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: With next generation sequencing technology, such as genotyping-by-sequencing (GBS), breeders can now genotype large populations with thousands of markers. This technology can be coupled with statistical methods such as genome-wide association studies (GWAS) and genomic selection (GS) to identify marker-trait associations and estimate marker effects. Where GWAS studies estimate each marker separately and use a p-value to determine significance, GS ignores significant thresholds and uses a training population (TP) with phenotypic and genotypic data to estimate all markers simultaneously. These effects are then used to predict the genomic estimated breeding values (GEBV) of other individuals. We performed a GWAS analysis using an elite population of soft red winter wheat lines and identified 14 QTL for grain yield (GY), four for Fusarium Head Blight (FHB) index, four for flour yield (FY), and five for softness equivalence (SE) Across all traits the R2 values ranged from 1.8 to 3.5%. We also determined the prediction accuracy GS for these four traits. Using all markers and lines we found the prediction accuracies ranged from 0.35 (FHB) to 0.57 (GY, Wooster, Ohio). In general using only data from TP lines with low GEI or marker subsets increased the GS accuracy. When using the TP to predict the performance of the 23 parental lines, accuracies using weighted correlations based on the parent’s contribution to the TP produced the highest prediction accuracies (r = 0.08 to 0.85). The accuracy of the TP model for predicting the phenotypes of the validation population was low (r = -0.25 to 0.22), especially for GY, but improved when using a subset of VP lines more related to the TP (r = 0.01 to 0.71). When analyzing the impact of GS on diversity and linkage disequilibrium (LD) we found that there was a loss of diversity across the two cycles of GS and that the second cycle of GS (GC1) is more inbred than the TP. LD for most marker pairs remains low across all three populations. The correlation of R2 values across the three populations ranged from 0.46 to 0.65. As LD between markers in the TP increases, a similar or higher LD is found with the F2 individuals comprising the two cycles of GS (GC0 and GC1). The frequency of the 1 allele for majority (46%) of markers associated with GY in Wooster, Ohio decreases while the remaining markers have either the 1 allele increasing or remaining unchanged. The preferred allele for these two trends is increasing for 95% and 80% of the markers respectively. The frequency of the 1 allele for individuals in the top 10% (best) and bottom 10% (worst) of the GC0 and GC1 individuals relative to the TP indicates that in the first cycle the majority (53%) of markers show signs of genetic drift while in the second cycle the majority (60%) show signs of direction selection. The results of this work show that these two breeding strategies could be useful for the SRWW program here of Ohio State. And indicates that GS impacts genetic diversity, LD, and allele frequencies.

Plant Breeding: Past, Present and Future

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Publisher : Springer
ISBN 13 : 3319232851
Total Pages : 710 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Plant Breeding: Past, Present and Future by : John E. Bradshaw

Download or read book Plant Breeding: Past, Present and Future written by John E. Bradshaw and published by Springer. This book was released on 2016-03-08 with total page 710 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to help plant breeders by reviewing past achievements, currently successful practices, and emerging methods and techniques. Theoretical considerations are also presented to strike the right balance between being as simple as possible but as complex as necessary. The United Nations predicts that the global human population will continue rising to 9.0 billion by 2050. World food production will need to increase between 70-100 per cent in just 40 years. First generation bio-fuels are also using crops and cropland to produce energy rather than food. In addition, land area used for agriculture may remain static or even decrease as a result of degradation and climate change, despite more land being theoretically available, unless crops can be bred which tolerate associated abiotic stresses. Lastly, it is unlikely that steps can be taken to mitigate all of the climate change predicted to occur by 2050, and beyond, and hence adaptation of farming systems and crop production will be required to reduce predicted negative effects on yields that will occur without crop adaptation. Substantial progress will therefore be required in bridging the yield gap between what is currently achieved per unit of land and what should be possible in future, with the best farming methods and best storage and transportation of food, given the availability of suitably adapted cultivars, including adaptation to climate change. My book is divided into four parts: Part I is an historical introduction; Part II deals with the origin of genetic variation by mutation and recombination of DNA; Part III explains how the mating system of a crop species determines the genetic structure of its landraces; Part IV considers the three complementary options for future progress: use of sexual reproduction in further conventional breeding, base broadening and introgression; mutation breeding; and genetically modified crops.

Molecular Plant Breeding

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Publisher : CABI
ISBN 13 : 1845936248
Total Pages : 756 pages
Book Rating : 4.8/5 (459 download)

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Book Synopsis Molecular Plant Breeding by : Yunbi Xu

Download or read book Molecular Plant Breeding written by Yunbi Xu and published by CABI. This book was released on 2010 with total page 756 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in plant genomics and molecular biology have revolutionized our understanding of plant genetics, providing new opportunities for more efficient and controllable plant breeding. Successful techniques require a solid understanding of the underlying molecular biology as well as experience in applied plant breeding. Bridging the gap between developments in biotechnology and its applications in plant improvement, Molecular Plant Breeding provides an integrative overview of issues from basic theories to their applications to crop improvement including molecular marker technology, gene mapping, genetic transformation, quantitative genetics, and breeding methodology.

The Global Fusarium Initiative for International Collaboration

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Publisher : CIMMYT
ISBN 13 : 970648146X
Total Pages : 147 pages
Book Rating : 4.7/5 (64 download)

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Book Synopsis The Global Fusarium Initiative for International Collaboration by : Tomohiro Ban

Download or read book The Global Fusarium Initiative for International Collaboration written by Tomohiro Ban and published by CIMMYT. This book was released on 2006 with total page 147 pages. Available in PDF, EPUB and Kindle. Book excerpt:

The Effect of Cycles of Genomic Selection on Wheat (Triticum Aestivum L.) Traits and on the Wheat Genome

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (137 download)

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Book Synopsis The Effect of Cycles of Genomic Selection on Wheat (Triticum Aestivum L.) Traits and on the Wheat Genome by : Maria Nelly Arguello Blanco

Download or read book The Effect of Cycles of Genomic Selection on Wheat (Triticum Aestivum L.) Traits and on the Wheat Genome written by Maria Nelly Arguello Blanco and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Breeders use genomic selection (GS) for rapid cycling of parents for crop improvement. GS increases efficiency of breeding by shortening the duration of breeding cycles. The effect of rapid cycling on the wheat genome is unknown. The first objective of this dissertation was to assess the effect of five rapid cycles on the wheat genome. The OSU wheat breeding program began GS with a training population (YTP) phenotyped for yield, quality, and fusarium head blight (FHB) resistance traits. This YTP was genotyped with 3972 single nucleotide polymorphism (SNP) markers. The phenotypes and genotypes were used to build a GS model to obtain genomic estimated breeding values (GEBV). The GEBVs of F2 plants were then used to advance plants through five cycles of GS (YC1, YC2, YC3, YC4, YC5). We assessed the impact of GS on allele frequencies, the forces driving these changes, genetic distance (GD), population differentiation (FST), and linkage disequilibrium (LD). Relative to the YTP, we found that 27% of SNP had a significant change in allele frequency, 18% SNPs were under selection, 13% changed due to genetic drift, 9.3% were undiscernible for drift or selection, and 18.5% were fixed by YC5. Genetic distance narrowed within cycle while the GD between cycles increased at a 0.02 units per cycle. The cycles differentiated from the YTP at a rate of 0.046 FST units per cycle. The YC5 was highly differentiated from the YTP with an FST value of 0.224. We found the correlation between LD matrices decreasing at -0.057 units per cycle. Overall, we found reduction in genetic diversity, increased genetic differentiation of cycles from the YTP, and changes in LD patterns over cycles. The change in the genome is not desired when implementing GS because the changes will lower the prediction accuracy as the number of cycles increases. The second objective of this dissertation was to estimate the accuracy of GS at predicting the phenotypes of lines derived from cycles of GS. Prediction accuracy is the correlation between GEVBs and observed phenotypes. We compared the prediction accuracies using three training (YTP, TP1721 and TP21) and two prediction populations (GSELPP and GDERPP). We found moderate prediction accuracies (range of -0.25 to 0.25) that varied by trait, training population, and prediction population. While the accuracies were moderate to low, there were significant differences between the top and bottom groups of GSELPP for yield and FHB resistance when they were classified by their GEBVs. This is important as breeders select lines with the best values and discard those with the worst values. Classifying the GSELPP lines using GEBVs based on the TP1721 and TP21 produced significant positive differences for yield suggesting that GS impacts yield even when accuracies are modest. An important role for GS may lie in discarding the worst lines prior to expensive field testing, rather than its ability to identify the very best lines. Breeders should use the prediction accuracies to modify their program to maximize the benefits of GS. This would include the selection of parents, crossing schemes, and field testing so program resources are used to create TPs based on past data have the greatest potential to accurately predict the future.

Wheat Landraces

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Publisher : Springer Nature
ISBN 13 : 3030773884
Total Pages : 268 pages
Book Rating : 4.0/5 (37 download)

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Book Synopsis Wheat Landraces by : Nusret Zencirci

Download or read book Wheat Landraces written by Nusret Zencirci and published by Springer Nature. This book was released on 2021-09-15 with total page 268 pages. Available in PDF, EPUB and Kindle. Book excerpt: Landraces possess a very large genetic base in population structure and are dynamic populations of cultivated plants with historical origin, distinct identity, and without any formal crop improvement. They are often genetically diverse, locally adapted, and associated with traditional farming systems. Resistance genes to biotic and abiotic stress factors, which are especially diversified in landraces, are of great interest to plant breeders, faced with global climate challenge. In addition, gene pools made of different landraces grown in different ecological conditions can be used for wheat breeding to enhance quality; yield and other desirable agricultural parameters. An estimated 75% of the genetic diversity of crop plants was lost in the last century due to the replacement of high yielding modern varieties. There is, thus, an urgent need to preserve existing species, not only for posterity but also as a means to secure food supply for a rising world population. In this book, we provide an overview of wheat landraces with special attention to genetic diversities, conservation, and utilization.

Inheritance and Improvement of Disease Resistance or Stress Tolerance for Triticeae Crops

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Publisher : Frontiers Media SA
ISBN 13 : 2889748154
Total Pages : 122 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis Inheritance and Improvement of Disease Resistance or Stress Tolerance for Triticeae Crops by : Pengtao Ma

Download or read book Inheritance and Improvement of Disease Resistance or Stress Tolerance for Triticeae Crops written by Pengtao Ma and published by Frontiers Media SA. This book was released on 2022-03-28 with total page 122 pages. Available in PDF, EPUB and Kindle. Book excerpt: