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From Sequences To Graphs
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Book Synopsis From Sequences to Graphs by : Annie Chateau
Download or read book From Sequences to Graphs written by Annie Chateau and published by John Wiley & Sons. This book was released on 2022-11-01 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: In order to study living organisms, scientists not only study them at an overall macroscopic scale but also on a more detailed microscopic scale. This observation, pushed to its limits, consists of investigating the very center of each cell, where we find the molecules that determine the way it functions: DNA (deoxyribonucleic acid) and RNA (ribonucleic acid). In an organism, DNA carries the genetic information, which is called the genome. It is represented as four-letter sequences using the letters A, C, G and T; based on these sequences, computer methods described in this book can answer fundamental questions in bioinformatics. This book explores how to quickly find sequences of a few hundred nucleotides within a genome that may be made up of several billion, how to compare those sequences and how to reconstruct the complete sequence of a genome. It also discusses the problems of identifying bacteria in a given environment and predicting the structure of RNA based on its sequence.
Book Synopsis Genome-Scale Algorithm Design by : Veli Mäkinen
Download or read book Genome-Scale Algorithm Design written by Veli Mäkinen and published by Cambridge University Press. This book was released on 2023-10-12 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: Guided by standard bioscience workflows in high-throughput sequencing analysis, this book for graduate students, researchers, and professionals in bioinformatics and computer science offers a unified presentation of genome-scale algorithms. This new edition covers the use of minimizers and other advanced data structures in pangenomics approaches.
Book Synopsis Connecting with Computability by : Liesbeth De Mol
Download or read book Connecting with Computability written by Liesbeth De Mol and published by Springer. This book was released on 2021-07-02 with total page 506 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 17th Conference on Computability in Europe, CiE 2021, organized by the University of Ghent in July 2021. Due to COVID-19 pandemic the conference was held virtually. The 48 full papers presented in this volume were carefully reviewed and selected from 50 submissions. CiE promotes the development of computability-related science, ranging over mathematics, computer science and applications in various natural and engineering sciences, such as physics and biology, as well as related fields, such as philosophy and history of computing. CiE 2021 had as its motto Connecting with Computability, a clear acknowledgement of the connecting and interdisciplinary nature of the conference series which is all the more important in a time where people are more than ever disconnected from one another due to the COVID-19 pandemic.
Book Synopsis Chromatic Graph Theory by : Gary Chartrand
Download or read book Chromatic Graph Theory written by Gary Chartrand and published by CRC Press. This book was released on 2019-11-28 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: With Chromatic Graph Theory, Second Edition, the authors present various fundamentals of graph theory that lie outside of graph colorings, including basic terminology and results, trees and connectivity, Eulerian and Hamiltonian graphs, matchings and factorizations, and graph embeddings. Readers will see that the authors accomplished the primary goal of this textbook, which is to introduce graph theory with a coloring theme and to look at graph colorings in various ways. The textbook also covers vertex colorings and bounds for the chromatic number, vertex colorings of graphs embedded on surfaces, and a variety of restricted vertex colorings. The authors also describe edge colorings, monochromatic and rainbow edge colorings, complete vertex colorings, several distinguishing vertex and edge colorings. Features of the Second Edition: The book can be used for a first course in graph theory as well as a graduate course The primary topic in the book is graph coloring The book begins with an introduction to graph theory so assumes no previous course The authors are the most widely-published team on graph theory Many new examples and exercises enhance the new edition
Download or read book Digraphs written by Jorgen Bang-Jensen and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 769 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of directed graphs (digraphs) has developed enormously over recent decades, yet the results are rather scattered across the journal literature. This is the first book to present a unified and comprehensive survey of the subject. In addition to covering the theoretical aspects, the authors discuss a large number of applications and their generalizations to topics such as the traveling salesman problem, project scheduling, genetics, network connectivity, and sparse matrices. Numerous exercises are included. For all graduate students, researchers and professionals interested in graph theory and its applications, this book will be essential reading.
Book Synopsis Graphs and Their Degree Sequences: A Survey by : S. Louis Hakimi
Download or read book Graphs and Their Degree Sequences: A Survey written by S. Louis Hakimi and published by . This book was released on 1976 with total page 13 pages. Available in PDF, EPUB and Kindle. Book excerpt: Some recent work on the relationship between an integer sequence and various graph theoretic properties which a realization of the sequence may or must possess is surveyed.
Book Synopsis Discrete Mathematics by : Oscar Levin
Download or read book Discrete Mathematics written by Oscar Levin and published by Createspace Independent Publishing Platform. This book was released on 2018-07-30 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Note: This is a custom edition of Levin's full Discrete Mathematics text, arranged specifically for use in a discrete math course for future elementary and middle school teachers. (It is NOT a new and updated edition of the main text.)This gentle introduction to discrete mathematics is written for first and second year math majors, especially those who intend to teach. The text began as a set of lecture notes for the discrete mathematics course at the University of Northern Colorado. This course serves both as an introduction to topics in discrete math and as the "introduction to proof" course for math majors. The course is usually taught with a large amount of student inquiry, and this text is written to help facilitate this.Four main topics are covered: counting, sequences, logic, and graph theory. Along the way proofs are introduced, including proofs by contradiction, proofs by induction, and combinatorial proofs.While there are many fine discrete math textbooks available, this text has the following advantages: - It is written to be used in an inquiry rich course.- It is written to be used in a course for future math teachers.- It is open source, with low cost print editions and free electronic editions.
Book Synopsis Research in Computational Molecular Biology by : Lenore J. Cowen
Download or read book Research in Computational Molecular Biology written by Lenore J. Cowen and published by Springer. This book was released on 2019-04-15 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 23rd Annual Conference on Research in Computational Molecular Biology, RECOMB 2019, held in Washington, DC, USA, in April 2019. The 17 extended and 20 short abstracts presented were carefully reviewed and selected from 175 submissions. The short abstracts are included in the back matter of the volume. The papers report on original research in all areas of computational molecular biology and bioinformatics.
Book Synopsis Threshold Graphs and Related Topics by : N.V.R. Mahadev
Download or read book Threshold Graphs and Related Topics written by N.V.R. Mahadev and published by Elsevier. This book was released on 1995-09-13 with total page 559 pages. Available in PDF, EPUB and Kindle. Book excerpt: Threshold graphs have a beautiful structure and possess many important mathematical properties. They have applications in many areas including computer science and psychology. Over the last 20 years the interest in threshold graphs has increased significantly, and the subject continues to attract much attention.The book contains many open problems and research ideas which will appeal to graduate students and researchers interested in graph theory. But above all Threshold Graphs and Related Topics provides a valuable source of information for all those working in this field.
Book Synopsis Partial Order Graphs for Multiple Sequence Alignment by : Catherine S. Grasso
Download or read book Partial Order Graphs for Multiple Sequence Alignment written by Catherine S. Grasso and published by . This book was released on 2005 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Complex Networks IX by : Sean Cornelius
Download or read book Complex Networks IX written by Sean Cornelius and published by Springer. This book was released on 2018-02-15 with total page 341 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to bring together researchers and practitioners working across domains and research disciplines to measure, model, and visualize complex networks. It collects the works presented at the 9th International Conference on Complex Networks (CompleNet) in Boston, MA, March, 2018. With roots in physical, information and social science, the study of complex networks provides a formal set of mathematical methods, computational tools and theories to describe, prescribe and predict dynamics and behaviors of complex systems. Despite their diversity, whether the systems are made up of physical, technological, informational, or social networks, they share many common organizing principles and thus can be studied with similar approaches. This book provides a view of the state-of-the-art in this dynamic field and covers topics such as group decision-making, brain and cellular connectivity, network controllability and resiliency, online activism, recommendation systems, and cyber security.
Book Synopsis Advances in Mining Graphs, Trees and Sequences by : Takashi Washio
Download or read book Advances in Mining Graphs, Trees and Sequences written by Takashi Washio and published by IOS Press. This book was released on 2005 with total page 224 pages. Available in PDF, EPUB and Kindle. Book excerpt: Ever since the early days of machine learning and data mining, it has been realized that the traditional attribute-value and item-set representations are too limited for many practical applications in domains such as chemistry, biology, network analysis and text mining. This has triggered a lot of research on mining and learning within alternative and more expressive representation formalisms such as computational logic, relational algebra, graphs, trees and sequences. The motivation for using graphs, trees and sequences. Is that they are 1) more expressive than flat representations, and 2) potentially more efficient than multi-relational learning and mining techniques. At the same time, the data structures of graphs, trees and sequences are among the best understood and most widely applied representations within computer science. Thus these representations offer ideal opportunities for developing interesting contributions in data mining and machine learning that are both theoretically well-founded and widely applicable. The goal of this book is to collect recent outstanding studies on mining and learning within graphs, trees and sequences in studies worldwide.
Book Synopsis Bioinformatics Algorithms by : Enno Ohlebusch
Download or read book Bioinformatics Algorithms written by Enno Ohlebusch and published by . This book was released on 2013 with total page 604 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Ramsey Theory written by Ronald L. Graham and published by John Wiley & Sons. This book was released on 1991-01-16 with total page 230 pages. Available in PDF, EPUB and Kindle. Book excerpt: Praise for the First Edition "Anyone interested in getting an introduction to Ramsey theorywill find this illuminating..." --MAA Reviews Covering all the major concepts, proofs, and theorems, theSecond Edition of Ramsey Theory is the ultimate guideto understanding every aspect of Shelah's proof, as well asthe original proof of van der Waerden. The book offers a historicalperspective of Ramsey's fundamental paper from 1930 andErdos' and Szekeres' article from 1935, while placingthe various theorems in the context of T. S. Motzkin'sthought on the subject of "Complete Disorder isImpossible." Ramsey Theory, Second Edition includes new and excitingcoverage of Graph Ramsey Theory and Euclidean Ramsey Theory andalso relates Ramsey Theory to other areas in discrete mathematics.In addition, the book features the unprovability results of Parisand Harrington and the methods from topological dynamics pioneeredby Furstenburg. Featuring worked proofs and outside applications, RamseyTheory, Second Edition addresses: * Ramsey and density theorems on both broad and meticulousscales * Extentions and implications of van der Waerden's Theorem,the Hales-Jewett Theorem, Roth's Theorem, Rado'sTheorem, Szemeredi's Theorem, and the Shelah Proof * Regular homogeneous and nonhomogeneous systems andequations * Special cases and broader interdisciplinary applications ofRamsey Theory principles An invaluable reference for professional mathematicians workingin discrete mathematics, combinatorics, and algorithms, RamseyTheory, Second Edition is the definitive work on thesubject.
Book Synopsis TI-Nspire For Dummies by : Jeff McCalla
Download or read book TI-Nspire For Dummies written by Jeff McCalla and published by John Wiley & Sons. This book was released on 2011-06-07 with total page 401 pages. Available in PDF, EPUB and Kindle. Book excerpt: The updated guide to the newest graphing calculator from Texas Instruments The TI-Nspire graphing calculator is popular among high school and college students as a valuable tool for calculus, AP calculus, and college-level algebra courses. Its use is allowed on the major college entrance exams. This book is a nuts-and-bolts guide to working with the TI-Nspire, providing everything you need to get up and running and helping you get the most out of this high-powered math tool. Texas Instruments’ TI-Nspire graphing calculator is perfect for high school and college students in advanced algebra and calculus classes as well as students taking the SAT, PSAT, and ACT exams This fully updated guide covers all enhancements to the TI-Nspire, including the touchpad and the updated software that can be purchased along with the device Shows how to get maximum value from this versatile math tool With updated screenshots and examples, TI-Nspire For Dummies provides practical, hands-on instruction to help students make the most of this revolutionary graphing calculator.
Book Synopsis Notes on Realizations of Sequences by Graphs with Factors by : Michael Koren
Download or read book Notes on Realizations of Sequences by Graphs with Factors written by Michael Koren and published by . This book was released on 1974 with total page 20 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Metric Temporal Graph Logic over Typed Attributed Graphs by : Holger Giese
Download or read book Metric Temporal Graph Logic over Typed Attributed Graphs written by Holger Giese and published by Universitätsverlag Potsdam. This book was released on 2018 with total page 36 pages. Available in PDF, EPUB and Kindle. Book excerpt: Various kinds of typed attributed graphs are used to represent states of systems from a broad range of domains. For dynamic systems, established formalisms such as graph transformations provide a formal model for defining state sequences. We consider the extended case where time elapses between states and introduce a logic to reason about these sequences. With this logic we express properties on the structure and attributes of states as well as on the temporal occurrence of states that are related by their inner structure, which no formal logic over graphs accomplishes concisely so far. Firstly, we introduce graphs with history by equipping every graph element with the timestamp of its creation and, if applicable, its deletion. Secondly, we define a logic on graphs by integrating the temporal operator until into the well-established logic of nested graph conditions. Thirdly, we prove that our logic is equally expressive to nested graph conditions by providing a suitable reduction. Finally, the implementation of this reduction allows for the tool-based analysis of metric temporal properties for state sequences. Verschiedene Arten von getypten attributierten Graphen werden benutzt, um Zustände von Systemen in vielen unterschiedlichen Anwendungsbereichen zu beschreiben. Der etablierte Formalismus der Graphtransformationen bietet ein formales Model, um Zustandssequenzen für dynamische Systeme zu definieren. Wir betrachten den erweiterten Fall von solchen Sequenzen, in dem Zeit zwischen zwei verschiedenen Systemzuständen vergeht, und führen eine Logik ein, um solche Sequenzen zu beschreiben. Mit dieser Logik drücken wir zum einen Eigenschaften über die Struktur und die Attribute von Zuständen aus und beschreiben zum anderen temporale Vorkommen von Zuständen, die durch ihre innere Struktur verbunden sind. Solche Eigenschaften können bisher von keiner der existierenden Logiken auf Graphen vergleichbar darstellt werden. Erstens führen wir Graphen mit Änderungshistorie ein, indem wir jedes Graphelement mit einem Zeitstempel seiner Erzeugung und, wenn nötig, seiner Löschung versehen. Zweitens definieren wir eine Logik auf Graphen, indem wir den Temporaloperator Until in die wohl-etablierte Logik der verschachtelten Graphbedingungen integrieren. Drittens beweisen wir, dass unsere Logik gleich ausdrucksmächtig ist, wie die Logik der verschachtelten Graphbedingungen, indem wir eine passende Reduktionsoperation definieren. Zuletzt erlaubt uns die Implementierung dieser Reduktionsoperation die werkzeukbasierte Analyse von metrisch-temporallogischen Eigenschaften für Zustandssequenzen zu führen.
