Enhancer Rnas

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Enhancer RNAs

Author : Ulf Andersson Ørom
Publisher :
ISBN 13 : 9781493940356
Total Pages : 252 pages
Book Rating : 4.9/5 (43 download)

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Book Synopsis Enhancer RNAs by : Ulf Andersson Ørom

Download or read book Enhancer RNAs written by Ulf Andersson Ørom and published by . This book was released on 2017 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides a comprehensive overview of the experimental and computational methodologies used to study the function of long non-coding RNA (ncRNAs) expressed from enhancers. Chapter detail both wet-lab and dry-lab techniques and annotating long ncRNAs and exploring transcription by assessing where transcription starts and generally how it occurs.Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Enhancer RNAs: Methods and Protocols aims to ensure successful results in this rapidly developing field.

RNA Exosome

Author : Torben Heick Jensen
Publisher : Springer Science & Business Media
ISBN 13 : 1441978410
Total Pages : 161 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis RNA Exosome by : Torben Heick Jensen

Download or read book RNA Exosome written by Torben Heick Jensen and published by Springer Science & Business Media. This book was released on 2011-06-29 with total page 161 pages. Available in PDF, EPUB and Kindle. Book excerpt: The diversity of RNAs inside living cells is amazing. We have known of the more “classic” RNA species: mRNA, tRNA, rRNA, snRNA and snoRNA for some time now, but in a steady stream new types of molecules are being described as it is becoming clear that most of the genomic information of cells ends up in RNA. To deal with the enormous load of resulting RNA processing and degradation reactions, cells need adequate and efficient molecular machines. The RNA exosome is arising as a major facilitator to this effect. Structural and functional data gathered over the last decade have illustrated the biochemical importance of this multimeric complex and its many co-factors, revealing its enormous regulatory power. By gathering some of the most prominent researchers in the exosome field, it is the aim of this volume to introduce this fascinating protein complex as well as to give a timely and rich account of its many functions. The exosome was discovered more than a decade ago by Phil Mitchell and David Tollervey by its ability to trim the 3’end of yeast, S. cerevisiae, 5. 8S rRNA. In a historic account they laid out the events surrounding this identification and the subsequent birth of the research field. In the chapter by Kurt Januszyk and Christopher Lima the structural organization of eukaryotic exosomes and their evolutionary counterparts in bacteria and archaea are discussed in large part through presentation of structures.

Studies on the Role of Enhancer RNAs in the Release of RNA Polymerase II from Promoter-proximal Pausing

Author : Vladyslava Gorbovytska
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (127 download)

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Book Synopsis Studies on the Role of Enhancer RNAs in the Release of RNA Polymerase II from Promoter-proximal Pausing by : Vladyslava Gorbovytska

Download or read book Studies on the Role of Enhancer RNAs in the Release of RNA Polymerase II from Promoter-proximal Pausing written by Vladyslava Gorbovytska and published by . This book was released on 2021 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Transcription and Splicing

Author : B. D. Hames
Publisher : Oxford University Press, USA
ISBN 13 :
Total Pages : 238 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Transcription and Splicing by : B. D. Hames

Download or read book Transcription and Splicing written by B. D. Hames and published by Oxford University Press, USA. This book was released on 1988 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gives a co-ordinated review of our present knowledge of eukaryotic RNA synthesis.

RNA Activation

Author : Long-Cheng Li
Publisher : Springer
ISBN 13 : 9811043108
Total Pages : 238 pages
Book Rating : 4.8/5 (11 download)

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Book Synopsis RNA Activation by : Long-Cheng Li

Download or read book RNA Activation written by Long-Cheng Li and published by Springer. This book was released on 2017-06-19 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers an essential guide to RNA activation (RNAa), an emerging and fascinating new field. RNAa is a small RNA-guided and Argonaute-dependent gene regulation phenomenon in which promoter-targeted short double-stranded RNAs (dsRNAs) induce target gene expression at the transcriptional level. It occurs primarily in the nucleus and can be mediated by artificially designed short duplex RNAs that target regulatory sequences (e.g., promoters, genes’ 3’ termini and enhancers) and naturally occurring small RNAs (e.g., miRNAs and C. elegans 22G-RNAs). With contributions from internationally respected RNA experts, this book provides comprehensive coverage of different RNAa mechanisms and a timely update on recent advances in RNAa research, with a focus on developing RNAa-based therapeutics. Special chapters are also devoted to the topics of gene activation induced by antisense oligonucleotides and the CRISPR system. As the first book to cover RNAa, it will be of interest to a wide audience, from scientists in academia and the pharmaceutical industry to clinicians who wish to further explore the biology of RNAa and related phenomena, so as to harness their full potential for use in biotechnology and drug development.

Agricultural Bioinformatics

Author : Kavi Kishor P.B.
Publisher : Springer
ISBN 13 : 8132218809
Total Pages : 296 pages
Book Rating : 4.1/5 (322 download)

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Book Synopsis Agricultural Bioinformatics by : Kavi Kishor P.B.

Download or read book Agricultural Bioinformatics written by Kavi Kishor P.B. and published by Springer. This book was released on 2014-07-14 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: A common approach to understanding the functional repertoire of a genome is through functional genomics. With systems biology burgeoning, bioinformatics has grown to a larger extent for plant genomes where several applications in the form of protein-protein interactions (PPI) are used to predict the function of proteins. With plant genes evolutionarily conserved, the science of bioinformatics in agriculture has caught interest with myriad of applications taken from bench side to in silico studies. A multitude of technologies in the form of gene analysis, biochemical pathways and molecular techniques have been exploited to an extent that they consume less time and have been cost-effective to use. As genomes are being sequenced, there is an increased amount of expression data being generated from time to time matching the need to link the expression profiles and phenotypic variation to the underlying genomic variation. This would allow us to identify candidate genes and understand the molecular basis/phenotypic variation of traits. While many bioinformatics methods like expression and whole genome sequence data of organisms in biological databases have been used in plants, we felt a common reference showcasing the reviews for such analysis is wanting. We envisage that this dearth would be facilitated in the form of this Springer book on Agricultural Bioinformatics. We thank all the authors and the publishers Springer, Germany for providing us an opportunity to review the bioinformatics works that the authors have carried in the recent past and hope the readers would find this book attention grabbing.

Recent Advances in Noncoding RNAs

Author : Lütfi Tutar
Publisher : BoD – Books on Demand
ISBN 13 : 1803560142
Total Pages : 238 pages
Book Rating : 4.8/5 (35 download)

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Book Synopsis Recent Advances in Noncoding RNAs by : Lütfi Tutar

Download or read book Recent Advances in Noncoding RNAs written by Lütfi Tutar and published by BoD – Books on Demand. This book was released on 2022-11-02 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: The discovery of noncoding RNAs (ncRNAs) is changed our understanding of genome, transcriptome, and interactions with proteome in a cell. Since the discovery of the first microRNA (miRNA) called lin-4 on Caenorhabditis elegans in 1993, our understanding of gene expression has deepened. Further miRNA discoveries have led to the investigation of new ncRNA families and their function, biogenesis, and interactions with other types of molecules. Recent developments in bioinformatics, public databases, sequencing technologies, and biochemical techniques have increased our understanding of the biogenesis, function, and interactions of ncRNAs. This book provides an overview of current ncRNA research dealing with human diseases and cancer and plant miRNAs.

Long Noncoding RNAs

Author : Riki Kurokawa
Publisher : Springer
ISBN 13 : 4431555765
Total Pages : 252 pages
Book Rating : 4.4/5 (315 download)

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Book Synopsis Long Noncoding RNAs by : Riki Kurokawa

Download or read book Long Noncoding RNAs written by Riki Kurokawa and published by Springer. This book was released on 2015-06-30 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a common principle of actions of long noncoding RNAs (lncRNAs) from points of view at the atomic, molecular and cellular levels. At the atomic level, chemical studies of ribonucleic acids explain the chemical behavior of lncRNAs. Structural biological analysis of lncRNAs and its binding proteins also reveal the precise mechanisms of their actions. Molecular biological approaches lead to insights into molecular mechanisms of these lncRNA actions. At the cellular or individual level of analysis, we grasp the biology and medicine of lncRNAs. These three layers of approaches are thoroughly new and produce novel insights into functions of lncRNAs in living cells. The book consists of five parts: 1) Bioinformatics and other methodologies for lncRNAs, 2) Atomic and molecular structures of lncRNAs, 3) Molecular functions of lncRNAs, 4) Biological actions of lncRNAs, and 5) Potential outcomes for clinical medicine. These sections connect well and work synergistically. The book is for researchers whose specialty is RNA biology and chemistry and also for advanced students at the graduate and undergraduate levels. Readers can grasp the leading edge of lncRNA studies in a comprehensive manner and are inspired to pursue their own particular interests.

Long Non-coding RNAs in Human Disease

Author : Kevin V. Morris
Publisher : Springer
ISBN 13 : 3319239074
Total Pages : 267 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Long Non-coding RNAs in Human Disease by : Kevin V. Morris

Download or read book Long Non-coding RNAs in Human Disease written by Kevin V. Morris and published by Springer. This book was released on 2016-04-13 with total page 267 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume focuses on the roles of long non-coding RNAs (lncRNAs) in contexts ranging from human cancers to cardiovascular disease and ageing. The role of lncRNAs in X-inactivation and those lncRNAs derived from pseudogenes, past retroelements integrated within the human genome, as well as the role these pseudogene-derived lncRNAs play in cancer development are discussed in detail. Further, the book examines the function of lncRNAs in diseases such as diabetes, in smooth muscle formation, and in the modulation of nuclear receptors, as well as in connection with perspectives on the development of personalized therapeutics. It offers an appealing and insightful resource for scientists and clinicians alike.

Studies on RNA Regulation

Author : Yaqiong Chen
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (11 download)

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Book Synopsis Studies on RNA Regulation by : Yaqiong Chen

Download or read book Studies on RNA Regulation written by Yaqiong Chen and published by . This book was released on 2019 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Pulldown experiments of iso3 followed by mass spectrometry identified Importin7 as an iso3-interacting factor that assists its cytoplasmic retention. Our results identified novel mechanisms for the dynamic localization of RBBP6 iso3, which shed light on the role of iso3 in mRNA 3’ processing and disease.

Human and Oncoviral Noncoding RNAs as Modulators of Cancer Aggressiveness and Disease Progression

Author : Deilson Elgui De Oliveira
Publisher : Frontiers Media SA
ISBN 13 : 2889665658
Total Pages : 185 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Human and Oncoviral Noncoding RNAs as Modulators of Cancer Aggressiveness and Disease Progression by : Deilson Elgui De Oliveira

Download or read book Human and Oncoviral Noncoding RNAs as Modulators of Cancer Aggressiveness and Disease Progression written by Deilson Elgui De Oliveira and published by Frontiers Media SA. This book was released on 2021-03-05 with total page 185 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Navigating Non-coding RNA

Author : Joanna Sztuba-Solinska
Publisher : Elsevier
ISBN 13 : 0323907008
Total Pages : 450 pages
Book Rating : 4.3/5 (239 download)

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Book Synopsis Navigating Non-coding RNA by : Joanna Sztuba-Solinska

Download or read book Navigating Non-coding RNA written by Joanna Sztuba-Solinska and published by Elsevier. This book was released on 2023-06-17 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: Navigating Non-coding RNA: From Biogenesis to Therapeutic Application provides a concise overview of the field of non-coding RNA (ncRNA). Chapters cover the history of discoveries that have occurred in the area of ncRNA, specific types of ncRNA, housekeeping ncRNAs such as ribosomal RNA, transfer RNA, small nuclear RNA and telomerase RNA, regulatory ncRNAs such as microRNA, small interfering RNA, long non-coding RNA and Y RNA. Biogenesis, structure, function, and regulation of each of these are also explored in addition to traditional and cutting-edge methods for the identification, functional characterization and structural characterization of ncRNA. The book also focuses on the different types of epitranscriptomic modifications and their involvement in regulating ncRNA structure, stability and intermolecular interactions in addition to the role of ncRNAs in a range of diseases and potential therapeutic applications. - Covers a wide range of non-coding RNAs, including ribosomal RNA, transfer RNA, telomerase RNA, microRNA, small interfering RNA and circular RNA - Features both traditional and novel methodologies for investigating ncRNA, from microarray and conventional chemical probing to CAGE-seq and computational methods - Includes chapters on ncRNAs in a range of diseases, including cancers, neurological disorders, cardiovascular conditions and infectious illnesses - Discusses novel therapeutic strategies for targeting ncRNAs, including CRISP/Ca9 applications and RNAi-based strategies - Explores the molecular mechanisms and intermolecular interactions of ncRNA

Evolution by Gene Duplication

Author : Susumu Ohno
Publisher : Springer Science & Business Media
ISBN 13 : 364286659X
Total Pages : 171 pages
Book Rating : 4.6/5 (428 download)

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Book Synopsis Evolution by Gene Duplication by : Susumu Ohno

Download or read book Evolution by Gene Duplication written by Susumu Ohno and published by Springer Science & Business Media. This book was released on 2013-12-11 with total page 171 pages. Available in PDF, EPUB and Kindle. Book excerpt: It is said that "necessity is the mother of invention". To be sure, wheels and pulleys were invented out of necessity by the tenacious minds of upright citi zens. Looking at the history of mankind, however, one has to add that "Ieisure is the mother of cultural improvement". Man's creative genius flourished only when his mind, freed from the worry of daily toils, was permitted to entertain apparently useless thoughts. In the same manner, one might say with regard to evolution that "natural selection mere(y tnodifted, while redundanry created". Natural selection has been extremely effective in policing alleHe mutations which arise in already existing gene loci. Because of natural selection, organisms have been able to adapt to changing environments, and by adaptive radiation many new species were created from a common ancestral form. Y et, being an effective policeman, natural selection is extremely conservative by nature. Had evolution been entirely dependent upon natural selection, from a bacterium only numerous forms of bacteria would have emerged. The creation of metazoans, vertebrates and finally mammals from unicellular organisms would have been quite impos sible, for such big leaps in evolution required the creation of new gene loci with previously nonexistent functions. Only the cistron which became redun dant was able to escape from the relentless pressure of natural selection, and by escaping, it accumulated formerly forbidden mutations to emerge as a new gene locus.

Long Non Coding RNA Biology

Author : M.R.S. Rao
Publisher : Springer
ISBN 13 : 9811052034
Total Pages : 336 pages
Book Rating : 4.8/5 (11 download)

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Book Synopsis Long Non Coding RNA Biology by : M.R.S. Rao

Download or read book Long Non Coding RNA Biology written by M.R.S. Rao and published by Springer. This book was released on 2017-08-16 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: This contributed volume offers a comprehensive and detailed overview of the various aspects of long non-coding RNAs and discusses their emerging significance. Written by leading experts in the field, it motivates young researchers around the globe, and offers graduate and postgraduate students fascinating insights into genes and their regulation in eukaryotes and higher organisms.

RNA and Cancer

Author : Jane Y. Wu
Publisher : Springer Science & Business Media
ISBN 13 : 364231659X
Total Pages : 256 pages
Book Rating : 4.6/5 (423 download)

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Book Synopsis RNA and Cancer by : Jane Y. Wu

Download or read book RNA and Cancer written by Jane Y. Wu and published by Springer Science & Business Media. This book was released on 2013-03-12 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: Accumulating evidence supports the role of defects in post-transcriptional gene regulation in the development of cancer. RNA and Cancer examines the recent advances in our understanding of post-transcriptional gene regulation, especially RNA processing and its role in cancer development and treatment. A particular focus is mRNA splicing, but other topics such as microRNAs, mRNA stability, the perinucleolar compartment, and oligonucleotide therapeutics are also covered in detail. All chapters have been written by internationally renowned experts. The book is intended for all with an interest in gene regulation and cancer biology, and especially for those not directly working on RNA biology, including clinicians and medical students. It is hoped that it will stimulate further innovative research collaborations between RNA biologists and cancer researchers to the benefit of patients.

Non Coding RNA Biology

Author : Boston Carter
Publisher : Callisto Reference
ISBN 13 : 9781641167611
Total Pages : 0 pages
Book Rating : 4.1/5 (676 download)

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Book Synopsis Non Coding RNA Biology by : Boston Carter

Download or read book Non Coding RNA Biology written by Boston Carter and published by Callisto Reference. This book was released on 2023-09-26 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Non-coding RNAs (ncRNAs) are RNA molecules that are not translated into proteins. They are divided into two categories, namely, housekeeping ncRNAs and regulatory ncRNAs. The main function of the ncRNAs is to maintain the normal cell functionalities. Small RNAs, ribosomal RNAs (rRNAs), long ncRNAs and transfer RNAs are some types of non-coding RNAs, which are abundant and functionally significant. Numerous types of small and long non-coding RNAs are considered important regulators of gene expression in a variety of processes, which range from embryonic development to innate immunity. This promotion of gene expression is done by a special ncRNA named enhancer RNA, which is transcribed from the enhancer region of the gene. The human genome is encoded with thousands of small and long RNA transcripts that do not code for proteins. This book explores all the important aspects of regulatory non-coding RNAs. It will prove to be immensely beneficial to students and researchers studying this topic.

Functional Importance of Cardiac Enhancer-associated Noncoding RNAs in Heart Development and Disease

Author :
Publisher :
ISBN 13 :
Total Pages : 16 pages
Book Rating : 4.:/5 (953 download)

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Book Synopsis Functional Importance of Cardiac Enhancer-associated Noncoding RNAs in Heart Development and Disease by :

Download or read book Functional Importance of Cardiac Enhancer-associated Noncoding RNAs in Heart Development and Disease written by and published by . This book was released on 2014 with total page 16 pages. Available in PDF, EPUB and Kindle. Book excerpt: We report here that the key information processing units within gene regulatory networks are enhancers. Enhancer activity is associated with the production of tissue-specific noncoding RNAs, yet the existence of such transcripts during cardiac development has not been established. Using an integrated genomic approach, we demonstrate that fetal cardiac enhancers generate long noncoding RNAs (lncRNAs) during cardiac differentiation and morphogenesis. Enhancer expression correlates with the emergence of active enhancer chromatin states, the initiation of RNA polymerase II at enhancer loci and expression of target genes. Orthologous human sequences are also transcribed in fetal human hearts and cardiac progenitor cells. Through a systematic bioinformatic analysis, we identified and characterized, for the first time, a catalog of lncRNAs that are expressed during embryonic stem cell differentiation into cardiomyocytes and associated with active cardiac enhancer sequences. RNA-sequencing demonstrates that many of these transcripts are polyadenylated, multi-exonic long noncoding RNAs. Moreover, knockdown of two enhancer-associated lncRNAs resulted in the specific downregulation of their predicted target genes. Interestingly, the reactivation of the fetal gene program, a hallmark of the stress response in the adult heart, is accompanied by increased expression of fetal cardiac enhancer transcripts. Altogether, these findings demonstrate that the activity of cardiac enhancers and expression of their target genes are associated with the production of enhancer-derived lncRNAs.