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Biological Pattern Discovery With R
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Book Synopsis Biological Pattern Discovery With R: Machine Learning Approaches by : Zheng Rong Yang
Download or read book Biological Pattern Discovery With R: Machine Learning Approaches written by Zheng Rong Yang and published by World Scientific. This book was released on 2021-09-17 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides the research directions for new or junior researchers who are going to use machine learning approaches for biological pattern discovery. The book was written based on the research experience of the author's several research projects in collaboration with biologists worldwide. The chapters are organised to address individual biological pattern discovery problems. For each subject, the research methodologies and the machine learning algorithms which can be employed are introduced and compared. Importantly, each chapter was written with the aim to help the readers to transfer their knowledge in theory to practical implementation smoothly. Therefore, the R programming environment was used for each subject in the chapters. The author hopes that this book can inspire new or junior researchers' interest in biological pattern discovery using machine learning algorithms.
Book Synopsis Biological Pattern Discovery with R by : Yang Rong Zheng
Download or read book Biological Pattern Discovery with R written by Yang Rong Zheng and published by . This book was released on 2021 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Advances In Genomic Sequence Analysis And Pattern Discovery by : Laura Elnitski
Download or read book Advances In Genomic Sequence Analysis And Pattern Discovery written by Laura Elnitski and published by World Scientific. This book was released on 2011-01-19 with total page 236 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mapping the genomic landscapes is one of the most exciting frontiers of science. We have the opportunity to reverse engineer the blueprints and the control systems of living organisms. Computational tools are key enablers in the deciphering process. This book provides an in-depth presentation of some of the important computational biology approaches to genomic sequence analysis. The first section of the book discusses methods for discovering patterns in DNA and RNA. This is followed by the second section that reflects on methods in various ways, including performance, usage and paradigms.
Book Synopsis Pattern Discovery in Biological Data Sets by : Stanislav Plamenov Angelov
Download or read book Pattern Discovery in Biological Data Sets written by Stanislav Plamenov Angelov and published by . This book was released on 2007 with total page 236 pages. Available in PDF, EPUB and Kindle. Book excerpt: There are two main approaches for extracting knowledge from sequence data. One approach compares newly acquired data with possibly, already annotated data under the assumption that data similarity implies functional similarity. The second approach mines the data for frequently occurring or surprising patterns. Such patterns are unlikely to occur at random and pinpoint candidates for further laboratory investigations.
Book Synopsis Discriminative Pattern Discovery on Biological Networks by : Fabio Fassetti
Download or read book Discriminative Pattern Discovery on Biological Networks written by Fabio Fassetti and published by Springer. This book was released on 2017-09-01 with total page 51 pages. Available in PDF, EPUB and Kindle. Book excerpt: This work provides a review of biological networks as a model for analysis, presenting and discussing a number of illuminating analyses. Biological networks are an effective model for providing insights about biological mechanisms. Networks with different characteristics are employed for representing different scenarios. This powerful model allows analysts to perform many kinds of analyses which can be mined to provide interesting information about underlying biological behaviors. The text also covers techniques for discovering exceptional patterns, such as a pattern accounting for local similarities and also collaborative effects involving interactions between multiple actors (for example genes). Among these exceptional patterns, of particular interest are discriminative patterns, namely those which are able to discriminate between two input populations (for example healthy/unhealthy samples). In addition, the work includes a discussion on the most recent proposal on discovering discriminative patterns, in which there is a labeled network for each sample, resulting in a database of networks representing a sample set. This enables the analyst to achieve a much finer analysis than with traditional techniques, which are only able to consider an aggregated network of each population.
Book Synopsis Pattern Recognition in Computational Molecular Biology by : Mourad Elloumi
Download or read book Pattern Recognition in Computational Molecular Biology written by Mourad Elloumi and published by John Wiley & Sons. This book was released on 2015-11-30 with total page 655 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive overview of high-performance pattern recognition techniques and approaches to Computational Molecular Biology This book surveys the developments of techniques and approaches on pattern recognition related to Computational Molecular Biology. Providing a broad coverage of the field, the authors cover fundamental and technical information on these techniques and approaches, as well as discussing their related problems. The text consists of twenty nine chapters, organized into seven parts: Pattern Recognition in Sequences, Pattern Recognition in Secondary Structures, Pattern Recognition in Tertiary Structures, Pattern Recognition in Quaternary Structures, Pattern Recognition in Microarrays, Pattern Recognition in Phylogenetic Trees, and Pattern Recognition in Biological Networks. Surveys the development of techniques and approaches on pattern recognition in biomolecular data Discusses pattern recognition in primary, secondary, tertiary and quaternary structures, as well as microarrays, phylogenetic trees and biological networks Includes case studies and examples to further illustrate the concepts discussed in the book Pattern Recognition in Computational Molecular Biology: Techniques and Approaches is a reference for practitioners and professional researches in Computer Science, Life Science, and Mathematics. This book also serves as a supplementary reading for graduate students and young researches interested in Computational Molecular Biology.
Book Synopsis Bio-kernel Machines And Applications by : Zheng Rong Yang
Download or read book Bio-kernel Machines And Applications written by Zheng Rong Yang and published by World Scientific. This book was released on 2024-03-06 with total page 267 pages. Available in PDF, EPUB and Kindle. Book excerpt: Due to its capability of handling very complex problems and its high flexibility in adapting to different algorithms, the kernel machine plays a crucial role in machine learning.Bio-Kernel Machines and Applications will introduce a new type of kernel machine for the exploration and modeling between the genotypic inherent structures of short protein sequences or nucleic sequences and the phenotypic biological properties or functions of proteins or nucleotides.The book seeks to establish the fundamentals of the bio-kernel machines by presenting the basic principle and theory of the kernel machine and the various formats of kernel machines, such as string kernel machines adapted for biological applications. The book will also introduce several biological applications of the mutation matrices, demonstrating how mutation matrices can enhance the efficiency and biological relevance of machine learning models applied in specific biological problems.Through analyzing current applications of bio-kernel machines, readers will delve into the advantages of the bio-kernel machines and explore how bio-kernel machines can be further enhanced to tackle a wide spectrum of biological challenges and pave the way for future advancements.
Book Synopsis Pattern Recognition in Computational Molecular Biology by : Mourad Elloumi
Download or read book Pattern Recognition in Computational Molecular Biology written by Mourad Elloumi and published by John Wiley & Sons. This book was released on 2015-12-29 with total page 654 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive overview of high-performance pattern recognition techniques and approaches to Computational Molecular Biology This book surveys the developments of techniques and approaches on pattern recognition related to Computational Molecular Biology. Providing a broad coverage of the field, the authors cover fundamental and technical information on these techniques and approaches, as well as discussing their related problems. The text consists of twenty nine chapters, organized into seven parts: Pattern Recognition in Sequences, Pattern Recognition in Secondary Structures, Pattern Recognition in Tertiary Structures, Pattern Recognition in Quaternary Structures, Pattern Recognition in Microarrays, Pattern Recognition in Phylogenetic Trees, and Pattern Recognition in Biological Networks. Surveys the development of techniques and approaches on pattern recognition in biomolecular data Discusses pattern recognition in primary, secondary, tertiary and quaternary structures, as well as microarrays, phylogenetic trees and biological networks Includes case studies and examples to further illustrate the concepts discussed in the book Pattern Recognition in Computational Molecular Biology: Techniques and Approaches is a reference for practitioners and professional researches in Computer Science, Life Science, and Mathematics. This book also serves as a supplementary reading for graduate students and young researches interested in Computational Molecular Biology.
Book Synopsis Pattern Discovery in Biomolecular Data by : Jason T. L. Wang
Download or read book Pattern Discovery in Biomolecular Data written by Jason T. L. Wang and published by Oxford University Press. This book was released on 1999-10-28 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: Finding patterns in biomolecular data, particularly in DNA and RNA, is at the center of modern biological research. These data are complex and growing rapidly, so the search for patterns requires increasingly sophisticated computer methods. Pattern Discovery in Biomolecular Data provides a clear, up-to-date summary of the principal techniques. Each chapter is self-contained, and the techniques are drawn from many fields, including graph theory, information theory, statistics, genetic algorithms, computer visualization, and vision. Since pattern searches often benefit from multiple approaches, the book presents methods in their purest form so that readers can best choose the method or combination that fits their needs. The chapters focus on finding patterns in DNA, RNA, and protein sequences, finding patterns in 2D and 3D structures, and choosing system components. This volume will be invaluable for all workers in genomics and genetic analysis, and others whose research requires biocomputing.
Book Synopsis Molecular Data Analysis Using R by : Csaba Ortutay
Download or read book Molecular Data Analysis Using R written by Csaba Ortutay and published by John Wiley & Sons. This book was released on 2017-02-06 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book addresses the difficulties experienced by wet lab researchers with the statistical analysis of molecular biology related data. The authors explain how to use R and Bioconductor for the analysis of experimental data in the field of molecular biology. The content is based upon two university courses for bioinformatics and experimental biology students (Biological Data Analysis with R and High-throughput Data Analysis with R). The material is divided into chapters based upon the experimental methods used in the laboratories. Key features include: • Broad appeal--the authors target their material to researchers in several levels, ensuring that the basics are always covered. • First book to explain how to use R and Bioconductor for the analysis of several types of experimental data in the field of molecular biology. • Focuses on R and Bioconductor, which are widely used for data analysis. One great benefit of R and Bioconductor is that there is a vast user community and very active discussion in place, in addition to the practice of sharing codes. Further, R is the platform for implementing new analysis approaches, therefore novel methods are available early for R users.
Book Synopsis Biological Knowledge Discovery Handbook by : Mourad Elloumi
Download or read book Biological Knowledge Discovery Handbook written by Mourad Elloumi and published by John Wiley & Sons. This book was released on 2015-02-04 with total page 1126 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive overview of preprocessing, mining, and postprocessing of biological data Molecular biology is undergoing exponential growth in both the volume and complexity of biological data and knowledge discovery offers the capacity to automate complex search and data analysis tasks. This book presents a vast overview of the most recent developments on techniques and approaches in the field of biological knowledge discovery and data mining (KDD) providing in-depth fundamental and technical field information on the most important topics encountered. Written by top experts, Biological Knowledge Discovery Handbook: Preprocessing, Mining, and Postprocessing of Biological Data covers the three main phases of knowledge discovery (data preprocessing, data processing also known as data mining and data postprocessing) and analyzes both verification systems and discovery systems. BIOLOGICAL DATA PREPROCESSING Part A: Biological Data Management Part B: Biological Data Modeling Part C: Biological Feature Extraction Part D Biological Feature Selection BIOLOGICAL DATA MINING Part E: Regression Analysis of Biological Data Part F Biological Data Clustering Part G: Biological Data Classification Part H: Association Rules Learning from Biological Data Part I: Text Mining and Application to Biological Data Part J: High-Performance Computing for Biological Data Mining Combining sound theory with practical applications in molecular biology, Biological Knowledge Discovery Handbook is ideal for courses in bioinformatics and biological KDD as well as for practitioners and professional researchers in computer science, life science, and mathematics.
Book Synopsis Proceedings of the Fourth SIAM International Conference on Data Mining by : Michael W. Berry
Download or read book Proceedings of the Fourth SIAM International Conference on Data Mining written by Michael W. Berry and published by SIAM. This book was released on 2004-01-01 with total page 556 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Fourth SIAM International Conference on Data Mining continues the tradition of providing an open forum for the presentation and discussion of innovative algorithms as well as novel applications of data mining. This is reflected in the talks by the four keynote speakers who discuss data usability issues in systems for data mining in science and engineering, issues raised by new technologies that generate biological data, ways to find complex structured patterns in linked data, and advances in Bayesian inference techniques. This proceedings includes 61 research papers.
Book Synopsis Frequent Pattern Mining by : Charu C. Aggarwal
Download or read book Frequent Pattern Mining written by Charu C. Aggarwal and published by Springer. This book was released on 2014-08-29 with total page 480 pages. Available in PDF, EPUB and Kindle. Book excerpt: This comprehensive reference consists of 18 chapters from prominent researchers in the field. Each chapter is self-contained, and synthesizes one aspect of frequent pattern mining. An emphasis is placed on simplifying the content, so that students and practitioners can benefit from the book. Each chapter contains a survey describing key research on the topic, a case study and future directions. Key topics include: Pattern Growth Methods, Frequent Pattern Mining in Data Streams, Mining Graph Patterns, Big Data Frequent Pattern Mining, Algorithms for Data Clustering and more. Advanced-level students in computer science, researchers and practitioners from industry will find this book an invaluable reference.
Book Synopsis Pattern Recognition in Bioinformatics by : Visakan Kadirkamanathan
Download or read book Pattern Recognition in Bioinformatics written by Visakan Kadirkamanathan and published by Springer. This book was released on 2009-08-31 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Fourth International Workshop on Pattern Recognition in Bioinformatics, PRIB 2009, held in Sheffield, UK, in September 2009. The 38 revised full papers presented were carefully reviewed and selected from numerous submissions. The topics covered by these papers range from image analysis for biomedical data to systems biology. The conference aims at crating a focus for the development and application of pattern recognition techniques in the biological domain.
Book Synopsis Biological Language Model: Theory And Application by : Qiwen Dong
Download or read book Biological Language Model: Theory And Application written by Qiwen Dong and published by World Scientific. This book was released on 2020-06-05 with total page 267 pages. Available in PDF, EPUB and Kindle. Book excerpt: Conceived as a cross between natural language processing methods and biological sequences in DNA, RNA and protein, biological language model is a new scientific research topic in bioinformatics that has been extensively studied by the authors. The basic theory and applications of this model are presented in this book to serve as an reference for graduate students and researchers.
Book Synopsis Intelligent Data Analysis: Developing New Methodologies Through Pattern Discovery and Recovery by : Wang, Hsiao-Fan
Download or read book Intelligent Data Analysis: Developing New Methodologies Through Pattern Discovery and Recovery written by Wang, Hsiao-Fan and published by IGI Global. This book was released on 2008-07-31 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: Pattern Recognition has a long history of applications to data analysis in business, military and social economic activities. While the aim of pattern recognition is to discover the pattern of a data set, the size of the data set is closely related to the methodology one adopts for analysis. Intelligent Data Analysis: Developing New Methodologies Through Pattern Discovery and Recovery tackles those data sets and covers a variety of issues in relation to intelligent data analysis so that patterns from frequent or rare events in spatial or temporal spaces can be revealed. This book brings together current research, results, problems, and applications from both theoretical and practical approaches.
Book Synopsis Pattern Recognition, Machine Intelligence and Biometrics by : Patrick S. P. Wang
Download or read book Pattern Recognition, Machine Intelligence and Biometrics written by Patrick S. P. Wang and published by Springer Science & Business Media. This book was released on 2012-02-13 with total page 883 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Pattern Recognition, Machine Intelligence and Biometrics" covers the most recent developments in Pattern Recognition and its applications, using artificial intelligence technologies within an increasingly critical field. It covers topics such as: image analysis and fingerprint recognition; facial expressions and emotions; handwriting and signatures; iris recognition; hand-palm gestures; and multimodal based research. The applications span many fields, from engineering, scientific studies and experiments, to biomedical and diagnostic applications, to personal identification and homeland security. In addition, computer modeling and simulations of human behaviors are addressed in this collection of 31 chapters by top-ranked professionals from all over the world in the field of PR/AI/Biometrics. The book is intended for researchers and graduate students in Computer and Information Science, and in Communication and Control Engineering. Dr. Patrick S. P. Wang is a Professor Emeritus at the College of Computer and Information Science, Northeastern University, USA, Zijiang Chair of ECNU, Shanghai, and NSC Visiting Chair Professor of NTUST, Taipei.