Analyzing Compositional Data With R

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Analyzing Compositional Data with R

Author : K. Gerald van den Boogaart
Publisher : Springer Science & Business Media
ISBN 13 : 3642368093
Total Pages : 269 pages
Book Rating : 4.6/5 (423 download)

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Book Synopsis Analyzing Compositional Data with R by : K. Gerald van den Boogaart

Download or read book Analyzing Compositional Data with R written by K. Gerald van den Boogaart and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 269 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the statistical analysis of compositional data sets, i.e., data in percentages, proportions, concentrations, etc. The subject is covered from its grounding principles to the practical use in descriptive exploratory analysis, robust linear models and advanced multivariate statistical methods, including zeros and missing values, and paying special attention to data visualization and model display issues. Many illustrated examples and code chunks guide the reader into their modeling and interpretation. And, though the book primarily serves as a reference guide for the R package “compositions,” it is also a general introductory text on Compositional Data Analysis. Awareness of their special characteristics spread in the Geosciences in the early sixties, but a strategy for properly dealing with them was not available until the works of Aitchison in the eighties. Since then, research has expanded our understanding of their theoretical principles and the potentials and limitations of their interpretation. This is the first comprehensive textbook addressing these issues, as well as their practical implications with regard to software. The book is intended for scientists interested in statistically analyzing their compositional data. The subject enjoys relatively broad awareness in the geosciences and environmental sciences, but the spectrum of recent applications also covers areas like medicine, official statistics, and economics. Readers should be familiar with basic univariate and multivariate statistics. Knowledge of R is recommended but not required, as the book is self-contained.

Applied Compositional Data Analysis

Author : Peter Filzmoser
Publisher : Springer
ISBN 13 : 3319964224
Total Pages : 288 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis Applied Compositional Data Analysis by : Peter Filzmoser

Download or read book Applied Compositional Data Analysis written by Peter Filzmoser and published by Springer. This book was released on 2018-11-03 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the statistical analysis of compositional data using the log-ratio approach. It includes a wide range of classical and robust statistical methods adapted for compositional data analysis, such as supervised and unsupervised methods like PCA, correlation analysis, classification and regression. In addition, it considers special data structures like high-dimensional compositions and compositional tables. The methodology introduced is also frequently compared to methods which ignore the specific nature of compositional data. It focuses on practical aspects of compositional data analysis rather than on detailed theoretical derivations, thus issues like graphical visualization and preprocessing (treatment of missing values, zeros, outliers and similar artifacts) form an important part of the book. Since it is primarily intended for researchers and students from applied fields like geochemistry, chemometrics, biology and natural sciences, economics, and social sciences, all the proposed methods are accompanied by worked-out examples in R using the package robCompositions.

Modeling and Analysis of Compositional Data

Author : Vera Pawlowsky-Glahn
Publisher : John Wiley & Sons
ISBN 13 : 111900313X
Total Pages : 274 pages
Book Rating : 4.1/5 (19 download)

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Book Synopsis Modeling and Analysis of Compositional Data by : Vera Pawlowsky-Glahn

Download or read book Modeling and Analysis of Compositional Data written by Vera Pawlowsky-Glahn and published by John Wiley & Sons. This book was released on 2015-02-17 with total page 274 pages. Available in PDF, EPUB and Kindle. Book excerpt: Modeling and Analysis of Compositional Data presents a practical and comprehensive introduction to the analysis of compositional data along with numerous examples to illustrate both theory and application of each method. Based upon short courses delivered by the authors, it provides a complete and current compendium of fundamental to advanced methodologies along with exercises at the end of each chapter to improve understanding, as well as data and a solutions manual which is available on an accompanying website. Complementing Pawlowsky-Glahn’s earlier collective text that provides an overview of the state-of-the-art in this field, Modeling and Analysis of Compositional Data fills a gap in the literature for a much-needed manual for teaching, self learning or consulting.

Geostatistics for Compositional Data with R

Author : Raimon Tolosana-Delgado
Publisher : Springer Nature
ISBN 13 : 303082568X
Total Pages : 275 pages
Book Rating : 4.0/5 (38 download)

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Book Synopsis Geostatistics for Compositional Data with R by : Raimon Tolosana-Delgado

Download or read book Geostatistics for Compositional Data with R written by Raimon Tolosana-Delgado and published by Springer Nature. This book was released on 2021-11-19 with total page 275 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a guided approach to the geostatistical modelling of compositional spatial data. These data are data in proportions, percentages or concentrations distributed in space which exhibit spatial correlation. The book can be divided into four blocks. The first block sets the framework and provides some background on compositional data analysis. Block two introduces compositional exploratory tools for both non-spatial and spatial aspects. Block three covers all necessary facets of multivariate spatial prediction for compositional data: variogram modelling, cokriging and validation. Finally, block four details strategies for simulation of compositional data, including transformations to multivariate normality, Gaussian cosimulation, multipoint simulation of compositional data, and common postprocessing techniques, valid for both Gaussian and multipoint methods. All methods are illustrated via applications to two types of data sets: one a large-scale geochemical survey, comprised of a full suite of geochemical variables, and the other from a mining context, where only the elements of greatest importance are considered. R codes are included for all aspects of the methodology, encapsulated in the R package "gmGeostats", available in CRAN.

Compositional Data Analysis in Practice

Author : Michael Greenacre
Publisher : CRC Press
ISBN 13 : 042984901X
Total Pages : 117 pages
Book Rating : 4.4/5 (298 download)

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Book Synopsis Compositional Data Analysis in Practice by : Michael Greenacre

Download or read book Compositional Data Analysis in Practice written by Michael Greenacre and published by CRC Press. This book was released on 2018-07-17 with total page 117 pages. Available in PDF, EPUB and Kindle. Book excerpt: Compositional data are quantitative descriptions of the parts of some whole, conveying exclusively relative information. Examples are found in various fields, including geology, medicine, chemistry, agriculture, economics, social science, etc. This concise book presents a very applied introduction to compositional data analysis, focussing on the use of R for analysis. It includes lots of real examples, code snippets, and colour figures, to illustrate the methods.

Compositional Data Analysis

Author : Vera Pawlowsky-Glahn
Publisher : John Wiley & Sons
ISBN 13 : 0470711353
Total Pages : 405 pages
Book Rating : 4.4/5 (77 download)

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Book Synopsis Compositional Data Analysis by : Vera Pawlowsky-Glahn

Download or read book Compositional Data Analysis written by Vera Pawlowsky-Glahn and published by John Wiley & Sons. This book was released on 2011-09-19 with total page 405 pages. Available in PDF, EPUB and Kindle. Book excerpt: It is difficult to imagine that the statistical analysis of compositional data has been a major issue of concern for more than 100 years. It is even more difficult to realize that so many statisticians and users of statistics are unaware of the particular problems affecting compositional data, as well as their solutions. The issue of ``spurious correlation'', as the situation was phrased by Karl Pearson back in 1897, affects all data that measures parts of some whole, such as percentages, proportions, ppm and ppb. Such measurements are present in all fields of science, ranging from geology, biology, environmental sciences, forensic sciences, medicine and hydrology. This book presents the history and development of compositional data analysis along with Aitchison's log-ratio approach. Compositional Data Analysis describes the state of the art both in theoretical fields as well as applications in the different fields of science. Key Features: Reflects the state-of-the-art in compositional data analysis. Gives an overview of the historical development of compositional data analysis, as well as basic concepts and procedures. Looks at advances in algebra and calculus on the simplex. Presents applications in different fields of science, including, genomics, ecology, biology, geochemistry, planetology, chemistry and economics. Explores connections to correspondence analysis and the Dirichlet distribution. Presents a summary of three available software packages for compositional data analysis. Supported by an accompanying website featuring R code. Applied scientists working on compositional data analysis in any field of science, both in academia and professionals will benefit from this book, along with graduate students in any field of science working with compositional data.

Geostatistical Analysis of Compositional Data

Author : Vera Pawlowsky-Glahn
Publisher : Oxford University Press
ISBN 13 : 0198038313
Total Pages : 204 pages
Book Rating : 4.1/5 (98 download)

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Book Synopsis Geostatistical Analysis of Compositional Data by : Vera Pawlowsky-Glahn

Download or read book Geostatistical Analysis of Compositional Data written by Vera Pawlowsky-Glahn and published by Oxford University Press. This book was released on 2004-06-03 with total page 204 pages. Available in PDF, EPUB and Kindle. Book excerpt: 1. Introduction. 2. Regionalized Compositions. 3. Spatial Covariance Structure. 4. Concepts of Null Correlation. 5. Cokriging. 6. Practical Aspects of Compositional Data Analysis. 7. Application to Real Data. Summary and Prospects. References. Index

Statistical Analysis of Microbiome Data with R

Author : Yinglin Xia
Publisher : Springer
ISBN 13 : 9811315345
Total Pages : 518 pages
Book Rating : 4.8/5 (113 download)

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Book Synopsis Statistical Analysis of Microbiome Data with R by : Yinglin Xia

Download or read book Statistical Analysis of Microbiome Data with R written by Yinglin Xia and published by Springer. This book was released on 2018-10-06 with total page 518 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique book addresses the statistical modelling and analysis of microbiome data using cutting-edge R software. It includes real-world data from the authors’ research and from the public domain, and discusses the implementation of R for data analysis step by step. The data and R computer programs are publicly available, allowing readers to replicate the model development and data analysis presented in each chapter, so that these new methods can be readily applied in their own research. The book also discusses recent developments in statistical modelling and data analysis in microbiome research, as well as the latest advances in next-generation sequencing and big data in methodological development and applications. This timely book will greatly benefit all readers involved in microbiome, ecology and microarray data analyses, as well as other fields of research.

Statistical Data Analysis Explained

Author : Clemens Reimann
Publisher : John Wiley & Sons
ISBN 13 : 1119965284
Total Pages : 380 pages
Book Rating : 4.1/5 (199 download)

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Book Synopsis Statistical Data Analysis Explained by : Clemens Reimann

Download or read book Statistical Data Analysis Explained written by Clemens Reimann and published by John Wiley & Sons. This book was released on 2011-08-31 with total page 380 pages. Available in PDF, EPUB and Kindle. Book excerpt: Few books on statistical data analysis in the natural sciences are written at a level that a non-statistician will easily understand. This is a book written in colloquial language, avoiding mathematical formulae as much as possible, trying to explain statistical methods using examples and graphics instead. To use the book efficiently, readers should have some computer experience. The book starts with the simplest of statistical concepts and carries readers forward to a deeper and more extensive understanding of the use of statistics in environmental sciences. The book concerns the application of statistical and other computer methods to the management, analysis and display of spatial data. These data are characterised by including locations (geographic coordinates), which leads to the necessity of using maps to display the data and the results of the statistical methods. Although the book uses examples from applied geochemistry, and a large geochemical survey in particular, the principles and ideas equally well apply to other natural sciences, e.g., environmental sciences, pedology, hydrology, geography, forestry, ecology, and health sciences/epidemiology. The book is unique because it supplies direct access to software solutions (based on R, the Open Source version of the S-language for statistics) for applied environmental statistics. For all graphics and tables presented in the book, the R-scripts are provided in the form of executable R-scripts. In addition, a graphical user interface for R, called DAS+R, was developed for convenient, fast and interactive data analysis. Statistical Data Analysis Explained: Applied Environmental Statistics with R provides, on an accompanying website, the software to undertake all the procedures discussed, and the data employed for their description in the book.

Handbook of Mathematical Geosciences

Author : B.S. Daya Sagar
Publisher : Springer
ISBN 13 : 3319789996
Total Pages : 911 pages
Book Rating : 4.3/5 (197 download)

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Book Synopsis Handbook of Mathematical Geosciences by : B.S. Daya Sagar

Download or read book Handbook of Mathematical Geosciences written by B.S. Daya Sagar and published by Springer. This book was released on 2018-06-25 with total page 911 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Open Access handbook published at the IAMG's 50th anniversary, presents a compilation of invited path-breaking research contributions by award-winning geoscientists who have been instrumental in shaping the IAMG. It contains 45 chapters that are categorized broadly into five parts (i) theory, (ii) general applications, (iii) exploration and resource estimation, (iv) reviews, and (v) reminiscences covering related topics like mathematical geosciences, mathematical morphology, geostatistics, fractals and multifractals, spatial statistics, multipoint geostatistics, compositional data analysis, informatics, geocomputation, numerical methods, and chaos theory in the geosciences.

Analyzing Linguistic Data

Author : R. H. Baayen
Publisher : Cambridge University Press
ISBN 13 : 1139470736
Total Pages : 40 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Analyzing Linguistic Data by : R. H. Baayen

Download or read book Analyzing Linguistic Data written by R. H. Baayen and published by Cambridge University Press. This book was released on 2008-03-06 with total page 40 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical analysis is a useful skill for linguists and psycholinguists, allowing them to understand the quantitative structure of their data. This textbook provides a straightforward introduction to the statistical analysis of language. Designed for linguists with a non-mathematical background, it clearly introduces the basic principles and methods of statistical analysis, using 'R', the leading computational statistics programme. The reader is guided step-by-step through a range of real data sets, allowing them to analyse acoustic data, construct grammatical trees for a variety of languages, quantify register variation in corpus linguistics, and measure experimental data using state-of-the-art models. The visualization of data plays a key role, both in the initial stages of data exploration and later on when the reader is encouraged to criticize various models. Containing over 40 exercises with model answers, this book will be welcomed by all linguists wishing to learn more about working with and presenting quantitative data.

Geostatistical Functional Data Analysis

Author : Jorge Mateu
Publisher : John Wiley & Sons
ISBN 13 : 1119387841
Total Pages : 452 pages
Book Rating : 4.1/5 (193 download)

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Book Synopsis Geostatistical Functional Data Analysis by : Jorge Mateu

Download or read book Geostatistical Functional Data Analysis written by Jorge Mateu and published by John Wiley & Sons. This book was released on 2021-12-13 with total page 452 pages. Available in PDF, EPUB and Kindle. Book excerpt: Geostatistical Functional Data Analysis Explore the intersection between geostatistics and functional data analysis with this insightful new reference Geostatistical Functional Data Analysis presents a unified approach to modelling functional data when spatial and spatio-temporal correlations are present. The Editors link together the wide research areas of geostatistics and functional data analysis to provide the reader with a new area called geostatistical functional data analysis that will bring new insights and new open questions to researchers coming from both scientific fields. This book provides a complete and up-to-date account to deal with functional data that is spatially correlated, but also includes the most innovative developments in different open avenues in this field. Containing contributions from leading experts in the field, this practical guide provides readers with the necessary tools to employ and adapt classic statistical techniques to handle spatial regression. The book also includes: A thorough introduction to the spatial kriging methodology when working with functions A detailed exposition of more classical statistical techniques adapted to the functional case and extended to handle spatial correlations Practical discussions of ANOVA, regression, and clustering methods to explore spatial correlation in a collection of curves sampled in a region In-depth explorations of the similarities and differences between spatio-temporal data analysis and functional data analysis Aimed at mathematicians, statisticians, postgraduate students, and researchers involved in the analysis of functional and spatial data, Geostatistical Functional Data Analysis will also prove to be a powerful addition to the libraries of geoscientists, environmental scientists, and economists seeking insightful new knowledge and questions at the interface of geostatistics and functional data analysis.

The Statistical Analysis of Compositional Data

Author : John Aitchison
Publisher :
ISBN 13 : 9781930665781
Total Pages : 416 pages
Book Rating : 4.6/5 (657 download)

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Book Synopsis The Statistical Analysis of Compositional Data by : John Aitchison

Download or read book The Statistical Analysis of Compositional Data written by John Aitchison and published by . This book was released on 2003 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt: Originally published in 1986, this text contains a new Foreword, extensive postscript detailing developments in the field since its first publication, and a selection of more recent literature references. The work provides a clear and systematic account of statistical methods designed to meet the special needs of the compositional data analyst. (Mathematics)

Multivariate Analysis of Ecological Data

Author : Michael Greenacre
Publisher : Fundacion BBVA
ISBN 13 : 8492937505
Total Pages : 336 pages
Book Rating : 4.4/5 (929 download)

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Book Synopsis Multivariate Analysis of Ecological Data by : Michael Greenacre

Download or read book Multivariate Analysis of Ecological Data written by Michael Greenacre and published by Fundacion BBVA. This book was released on 2014-01-09 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: La diversidad biológica es fruto de la interacción entre numerosas especies, ya sean marinas, vegetales o animales, a la par que de los muchos factores limitantes que caracterizan el medio que habitan. El análisis multivariante utiliza las relaciones entre diferentes variables para ordenar los objetos de estudio según sus propiedades colectivas y luego clasificarlos; es decir, agrupar especies o ecosistemas en distintas clases compuestas cada una por entidades con propiedades parecidas. El fin último es relacionar la variabilidad biológica observada con las correspondientes características medioambientales. Multivariate Analysis of Ecological Data explica de manera completa y estructurada cómo analizar e interpretar los datos ecológicos observados sobre múltiples variables, tanto biológicos como medioambientales. Tras una introducción general a los datos ecológicos multivariantes y la metodología estadística, se abordan en capítulos específicos, métodos como aglomeración (clustering), regresión, biplots, escalado multidimensional, análisis de correspondencias (simple y canónico) y análisis log-ratio, con atención también a sus problemas de modelado y aspectos inferenciales. El libro plantea una serie de aplicaciones a datos reales derivados de investigaciones ecológicas, además de dos casos detallados que llevan al lector a apreciar los retos de análisis, interpretación y comunicación inherentes a los estudios a gran escala y los diseños complejos.

Statistics for Ecologists Using R and Excel

Author : Mark Gardener
Publisher : Pelagic Publishing Ltd
ISBN 13 : 1784271411
Total Pages : 503 pages
Book Rating : 4.7/5 (842 download)

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Book Synopsis Statistics for Ecologists Using R and Excel by : Mark Gardener

Download or read book Statistics for Ecologists Using R and Excel written by Mark Gardener and published by Pelagic Publishing Ltd. This book was released on 2017-01-16 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a book about the scientific process and how you apply it to data in ecology. You will learn how to plan for data collection, how to assemble data, how to analyze data and finally how to present the results. The book uses Microsoft Excel and the powerful Open Source R program to carry out data handling as well as producing graphs. Statistical approaches covered include: data exploration; tests for difference – t-test and U-test; correlation – Spearman’s rank test and Pearson product-moment; association including Chi-squared tests and goodness of fit; multivariate testing using analysis of variance (ANOVA) and Kruskal–Wallis test; and multiple regression. Key skills taught in this book include: how to plan ecological projects; how to record and assemble your data; how to use R and Excel for data analysis and graphs; how to carry out a wide range of statistical analyses including analysis of variance and regression; how to create professional looking graphs; and how to present your results. New in this edition: a completely revised chapter on graphics including graph types and their uses, Excel Chart Tools, R graphics commands and producing different chart types in Excel and in R; an expanded range of support material online, including; example data, exercises and additional notes & explanations; a new chapter on basic community statistics, biodiversity and similarity; chapter summaries and end-of-chapter exercises. Praise for the first edition: This book is a superb way in for all those looking at how to design investigations and collect data to support their findings. – Sue Townsend, Biodiversity Learning Manager, Field Studies Council [M]akes it easy for the reader to synthesise R and Excel and there is extra help and sample data available on the free companion webpage if needed. I recommended this text to the university library as well as to colleagues at my student workshops on R. Although I initially bought this book when I wanted to discover R I actually also learned new techniques for data manipulation and management in Excel – Mark Edwards, EcoBlogging A must for anyone getting to grips with data analysis using R and excel. – Amazon 5-star review It has been very easy to follow and will be perfect for anyone. – Amazon 5-star review A solid introduction to working with Excel and R. The writing is clear and informative, the book provides plenty of examples and figures so that each string of code in R or step in Excel is understood by the reader. – Goodreads, 4-star review

Remote Compositional Analysis

Author : Janice L. Bishop
Publisher : Cambridge University Press
ISBN 13 : 110718620X
Total Pages : 655 pages
Book Rating : 4.1/5 (71 download)

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Book Synopsis Remote Compositional Analysis by : Janice L. Bishop

Download or read book Remote Compositional Analysis written by Janice L. Bishop and published by Cambridge University Press. This book was released on 2019-11-28 with total page 655 pages. Available in PDF, EPUB and Kindle. Book excerpt: Comprehensive overview of the spectroscopic, mineralogical, and geochemical techniques used in planetary remote sensing.

Compositional Data Analysis

Author : Josep Antoni Martín-Fernández
Publisher : Springer
ISBN 13 : 3319448110
Total Pages : 211 pages
Book Rating : 4.3/5 (194 download)

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Book Synopsis Compositional Data Analysis by : Josep Antoni Martín-Fernández

Download or read book Compositional Data Analysis written by Josep Antoni Martín-Fernández and published by Springer. This book was released on 2016-11-19 with total page 211 pages. Available in PDF, EPUB and Kindle. Book excerpt: The authoritative contributions gathered in this volume reflect the state of the art in compositional data analysis (CoDa). The respective chapters cover all aspects of CoDa, ranging from mathematical theory, statistical methods and techniques to its broad range of applications in geochemistry, the life sciences and other disciplines. The selected and peer-reviewed papers were originally presented at the 6th International Workshop on Compositional Data Analysis, CoDaWork 2015, held in L’Escala (Girona), Spain. Compositional data is defined as vectors of positive components and constant sum, and, more generally, all those vectors representing parts of a whole which only carry relative information. Examples of compositional data can be found in many different fields such as geology, chemistry, economics, medicine, ecology and sociology. As most of the classical statistical techniques are incoherent on compositions, in the 1980s John Aitchison proposed the log-ratio approach to CoDa. This became the foundation of modern CoDa, which is now based on a specific geometric structure for the simplex, an appropriate representation of the sample space of compositional data. The International Workshops on Compositional Data Analysis offer a vital discussion forum for researchers and practitioners concerned with the statistical treatment and modelling of compositional data or other constrained data sets and the interpretation of models and their applications. The goal of the workshops is to summarize and share recent developments, and to identify important lines of future research.